Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq530 120 3e-22 seq788 116 3e-21 seq400 104 2e-17 seq687 100 2e-16 seq1780 98.7 9e-16 seq1206 98.7 9e-16 seq912 98.7 9e-16 >seq530 Length=553347 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||| || ||||| | ||||| | ||||| ||| | Sbjct 260214 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATTACTTTGGAAGTGGAGAGCTCT 260273 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| |||||| |||||||| || || ||||| || || Sbjct 260274 GACACCATCGACAATGTCAAAGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCAG 260333 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||| | || ||| |||||||| ||||||| ||| ||| | || ||||| || Sbjct 260334 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAG-AACTTTGGCTGATTACAA 260392 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||| || || || || |||| || || || Sbjct 260393 CATTCAGAAGGAGTCCACTCTTCACTTGGTCTT 260425 >seq788 Length=1574065 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || |||||||| | || || | || || ||| | Sbjct 100589 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 100648 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| |||||||| || || ||||| || || Sbjct 100649 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 100708 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||| | || ||| |||||||| ||||| | ||| ||| | || || || || Sbjct 100709 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAG-AACTTTGGCTGACTACAA 100767 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| || || ||||| ||||||| |||||| | || | ||||| Sbjct 100768 CATTCAGAAGGAGTCTACCCTTCATTTGGTGTTACGTCTGCGTGGAGG 100815 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || |||||||| | || || | || || ||| | Sbjct 108025 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTRGAGAGCTCT 108084 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| |||||||| || || ||||| || || Sbjct 108085 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 108144 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||| | || ||| |||||||| ||||| | ||| ||| | || || || || Sbjct 108145 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAG-AACTTTGGCTGACTACAA 108203 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| || || ||||| ||||||| |||||| | || | ||||| Sbjct 108204 CATTCAGAAGGAGTCTACCCTTCATTTGGTGTTACGTCTGCGTGGAGG 108251 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || |||||||| | || || | || || ||| Sbjct 693120 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGTTCT 693179 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| |||||||| || || || || || || Sbjct 693180 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCACCGGACCAG 693239 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||| |||| | || ||| |||||||| ||||||| ||| ||| | || || || || Sbjct 693240 CAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAG-AACTTTGGCTGACTACAA 693298 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||| || || |||||| |||| || || || Sbjct 693299 CATTCAGAAGGAGTCTACACTTCACTTGGTCTT 693331 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | || ||||| | || ||| |||| || || | Sbjct 107569 ATGCAGATCTTTGTTAAGACACTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGCTCT 107628 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| |||||||| ||||| ||||| Sbjct 107629 GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 107688 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || || || |||| || ||| || || || ||||||| | | |||| || ||||| || Sbjct 107689 CARAGGCTTATTTTCGCCGGAAAACAGCTAGAAGATGGCCG-CACGTTGGCTGATTACAA 107747 Query 24170 CATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 107748 TATCCAGAAGGAATCCAC 107765 >seq400 Length=13612 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||| | ||||| || | || || |||| || ||| | Sbjct 2273 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 2214 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||||| ||||| |||||||| ||||| || || Sbjct 2213 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 2154 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| | || | || ||| || || || ||||||| | | | | | |||||| || Sbjct 2153 CAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAT 2094 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 2093 ATCCAGAAAGAATCAAC 2077 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | ||||| | ||||| ||| | Sbjct 2045 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 1986 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| ||||||| ||||||||||| || ||||| || || Sbjct 1985 GACACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 1926 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | ||| ||||| || || |||| || | | || || ||| Sbjct 1925 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGAAGGACTCTTGCTGACTACAAC 1866 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || ||| ||||||| ||| Sbjct 1865 ATCCAGAAGGAGTCGACACTTCATTTGGTG 1836 >seq687 Length=897029 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || || ||| | ||||| | ||||| ||| | Sbjct 268526 ATGCAGATATTTGTGAAAACTCTTACCGGTAAAACCATTACTCTAGAAGTTGAGAGCTCA 268585 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || ||| |||||| ||||||||||| || ||||| || ||| Sbjct 268586 GACACCATTGACAATGTGAAAGCTAAGATTCAAGACAAAGAAGGAATCCCTCCGGACCAA 268645 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | || ||||||||||| || |||| | | | ||||| ||| Sbjct 268646 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGCACTCTTGCGGATTACAAC 268705 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| || || ||| |||| Sbjct 268706 ATCCAAAAGGAGTCAACACTTCA 268728 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || ||| |||| ||| | || ||||| | Sbjct 268070 ATGCAGATCTTTGTCAAGACTCTTACAGGGAAAACGATAACCCTTGAGGTCGAAAGCTCA 268129 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| ||||| ||||| ||||| |||||||| || ||| Sbjct 268130 GATACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATACCTCCGGACCAA 268189 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | ||| ||||| ||||| |||| | | | | ||||| ||| Sbjct 268190 CAGAGACTTATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGTACTCTTGCTGATTACAAC 268249 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || || ||||| Sbjct 268250 ATCCAGAAGGAGTCAACCCTTCAT 268273 >seq1780 Length=424430 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || ||| | |||||| | ||||||||| Sbjct 97684 ATGCAGATATTCGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 97625 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || ||| ||||| ||||| ||||| || ||||| |||||| Sbjct 97624 GACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 97565 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||||| || | || || || || ||||| |||| ||| || || ||||| || Sbjct 97564 CAGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAA-CGCTTGCAGATTACAA 97506 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||||||||| || | ||| | ||| | | ||||||| || Sbjct 97505 CATCCAAAAAGAATCAACTCTCCATCTCGTGCTTCGTCTGAGAGGTGG 97458 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || ||||| |||| || | ||||| ||| | Sbjct 97456 ATGCAGATTTTTGTCAAGACTCTTACCGGAAAGACGATAACTTTGGAAGTTGAGAGCTCG 97397 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | | || |||||| ||||||||||| || || || || ||| Sbjct 97396 GACACAATCGATAACCTGAAGTCCAAGATTCAGGACAAAGAAGGGATCCCACCAGACCAA 97337 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGC-GATTATA 24168 |||||||| || | | |||||||||||||||||| | | || | | || ||||| | Sbjct 97336 CAGAGACTCATCTTTGCAGGCAAGCAACTCGAAGATGGTCGGACTCTT--GCTGATTACA 97279 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 |||| || || || || || | ||| | ||| | ||| Sbjct 97278 ACATCCAGAAGGAGTCAACCCTCCATCTCGTGCTGAGA 97241 >seq1206 Length=1516661 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 23980 AGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAG 24039 ||| ||| || ||||| | || || ||||| |||| || || |||| || | || | Sbjct 451608 AGCAAAAAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTTGAGG 451549 Query 24040 TCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATAC 24099 ||||| || ||||||||||| | ||||| ||||| ||||| ||||| || | Sbjct 451548 TCGAGTCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCC 451489 Query 24100 CTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCA 24159 | || || || ||| || |||||| || ||| ||||| |||||||| | | | | | Sbjct 451488 CACCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTACCTTAG 451429 Query 24160 GCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 |||||| ||||| || || ||||| || |||| Sbjct 451428 CCGATTACAACATCCAGAAGGAATCAACGCTTCA 451395 >seq912 Length=1276171 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||||| ||||| |||||| | ||||| || | || || |||| || ||| Sbjct 750930 ATGCAAGTTTTTGTGAAAACACTCACTGGTAAGACCATCACTCTCGAGGTTGAGAGTTCT 750989 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| ||||| || ||||| || || Sbjct 750990 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAG 751049 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || || ||||| || ||||||| | | | | | ||||| || Sbjct 751050 CAAAGATTGATCTTCGCTGGTAAGCAGCTAGAAGATGGCCGTACCTTGGCTGATTACAAT 751109 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || |||||||| ||| | ||||| || | | || ||||| || Sbjct 751110 ATCCAGAAAGAATCAACACTCCATTTGGTTCTCCGGTTAAGAGGTGG 751156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429924267987045