Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq530 120 3e-22
seq788 116 3e-21
seq400 104 2e-17
seq687 100 2e-16
seq1780 98.7 9e-16
seq1206 98.7 9e-16
seq912 98.7 9e-16
>seq530
Length=553347
Score = 120 bits (132), Expect = 3e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || ||||| || ||||| | ||||| | ||||| ||| |
Sbjct 260214 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATTACTTTGGAAGTGGAGAGCTCT 260273
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | |||||| |||||| |||||||| || || ||||| || ||
Sbjct 260274 GACACCATCGACAATGTCAAAGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCAG 260333
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
||||| |||| | || ||| |||||||| ||||||| ||| ||| | || ||||| ||
Sbjct 260334 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAG-AACTTTGGCTGATTACAA 260392
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|||||| || || || || |||| || || ||
Sbjct 260393 CATTCAGAAGGAGTCCACTCTTCACTTGGTCTT 260425
>seq788
Length=1574065
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || || |||||||| | || || | || || ||| |
Sbjct 100589 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 100648
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | |||||| ||||| |||||||| || || ||||| || ||
Sbjct 100649 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 100708
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
||||| |||| | || ||| |||||||| ||||| | ||| ||| | || || || ||
Sbjct 100709 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAG-AACTTTGGCTGACTACAA 100767
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|||||| || || ||||| ||||||| |||||| | || | |||||
Sbjct 100768 CATTCAGAAGGAGTCTACCCTTCATTTGGTGTTACGTCTGCGTGGAGG 100815
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || || |||||||| | || || | || || ||| |
Sbjct 108025 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTRGAGAGCTCT 108084
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | |||||| ||||| |||||||| || || ||||| || ||
Sbjct 108085 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 108144
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
||||| |||| | || ||| |||||||| ||||| | ||| ||| | || || || ||
Sbjct 108145 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAG-AACTTTGGCTGACTACAA 108203
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|||||| || || ||||| ||||||| |||||| | || | |||||
Sbjct 108204 CATTCAGAAGGAGTCTACCCTTCATTTGGTGTTACGTCTGCGTGGAGG 108251
Score = 98.7 bits (108), Expect = 9e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || || |||||||| | || || | || || |||
Sbjct 693120 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGTTCT 693179
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| ||||| |||||||| || || || || || ||
Sbjct 693180 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCACCGGACCAG 693239
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
|||||| |||| | || ||| |||||||| ||||||| ||| ||| | || || || ||
Sbjct 693240 CAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAG-AACTTTGGCTGACTACAA 693298
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|||||| || || |||||| |||| || || ||
Sbjct 693299 CATTCAGAAGGAGTCTACACTTCACTTGGTCTT 693331
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || ||| | || ||||| | || ||| |||| || || |
Sbjct 107569 ATGCAGATCTTTGTTAAGACACTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGCTCT 107628
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || || ||||| ||||| |||||||| ||||| |||||
Sbjct 107629 GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 107688
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
|| || || |||| || ||| || || || ||||||| | | |||| || ||||| ||
Sbjct 107689 CARAGGCTTATTTTCGCCGGAAAACAGCTAGAAGATGGCCG-CACGTTGGCTGATTACAA 107747
Query 24170 CATTCAAAAAGAATCTAC 24187
|| || || ||||| ||
Sbjct 107748 TATCCAGAAGGAATCCAC 107765
>seq400
Length=13612
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| |||||| | ||||| || | || || |||| || ||| |
Sbjct 2273 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 2214
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || || ||||||| ||||| |||||||| ||||| || ||
Sbjct 2213 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 2154
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||| | || | || ||| || || || ||||||| | | | | | |||||| ||
Sbjct 2153 CAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAT 2094
Query 24171 ATTCAAAAAGAATCTAC 24187
|| || |||||||| ||
Sbjct 2093 ATCCAGAAAGAATCAAC 2077
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | ||||| || | ||||| | ||||| ||| |
Sbjct 2045 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 1986
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | |||||| ||||||| ||||||||||| || ||||| || ||
Sbjct 1985 GACACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 1926
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| || || | | ||| ||||| || || |||| || | | || || |||
Sbjct 1925 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGAAGGACTCTTGCTGACTACAAC 1866
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| || || || || ||| ||||||| |||
Sbjct 1865 ATCCAGAAGGAGTCGACACTTCATTTGGTG 1836
>seq687
Length=897029
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| ||||| | || || ||| | ||||| | ||||| ||| |
Sbjct 268526 ATGCAGATATTTGTGAAAACTCTTACCGGTAAAACCATTACTCTAGAAGTTGAGAGCTCA 268585
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || ||| |||||| ||||||||||| || ||||| || |||
Sbjct 268586 GACACCATTGACAATGTGAAAGCTAAGATTCAAGACAAAGAAGGAATCCCTCCGGACCAA 268645
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||||| || | || ||||||||||| || |||| | | | ||||| |||
Sbjct 268646 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGCACTCTTGCGGATTACAAC 268705
Query 24171 ATTCAAAAAGAATCTACAATTCA 24193
|| ||||| || || ||| ||||
Sbjct 268706 ATCCAAAAGGAGTCAACACTTCA 268728
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | || || ||| |||| ||| | || ||||| |
Sbjct 268070 ATGCAGATCTTTGTCAAGACTCTTACAGGGAAAACGATAACCCTTGAGGTCGAAAGCTCA 268129
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| |||||||| | ||||| ||||| ||||| ||||| |||||||| || |||
Sbjct 268130 GATACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATACCTCCGGACCAA 268189
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||||| || | | ||| ||||| ||||| |||| | | | | ||||| |||
Sbjct 268190 CAGAGACTTATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGTACTCTTGCTGATTACAAC 268249
Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194
|| || || || || || |||||
Sbjct 268250 ATCCAGAAGGAGTCAACCCTTCAT 268273
>seq1780
Length=424430
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || | || || ||| | |||||| | |||||||||
Sbjct 97684 ATGCAGATATTCGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 97625
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || ||| ||||| ||||| ||||| || ||||| ||||||
Sbjct 97624 GACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 97565
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
|||||||| || | || || || || ||||| |||| ||| || || ||||| ||
Sbjct 97564 CAGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAA-CGCTTGCAGATTACAA 97506
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||| ||||||||||| || | ||| | ||| | | ||||||| ||
Sbjct 97505 CATCCAAAAAGAATCAACTCTCCATCTCGTGCTTCGTCTGAGAGGTGG 97458
Score = 82.4 bits (90), Expect = 7e-11
Identities = 151/218 (69%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | || ||||| |||| || | ||||| ||| |
Sbjct 97456 ATGCAGATTTTTGTCAAGACTCTTACCGGAAAGACGATAACTTTGGAAGTTGAGAGCTCG 97397
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| ||||| | | || |||||| ||||||||||| || || || || |||
Sbjct 97396 GACACAATCGATAACCTGAAGTCCAAGATTCAGGACAAAGAAGGGATCCCACCAGACCAA 97337
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGC-GATTATA 24168
|||||||| || | | |||||||||||||||||| | | || | | || ||||| |
Sbjct 97336 CAGAGACTCATCTTTGCAGGCAAGCAACTCGAAGATGGTCGGACTCTT--GCTGATTACA 97279
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206
|||| || || || || || | ||| | ||| | |||
Sbjct 97278 ACATCCAGAAGGAGTCAACCCTCCATCTCGTGCTGAGA 97241
>seq1206
Length=1516661
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 23980 AGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAG 24039
||| ||| || ||||| | || || ||||| |||| || || |||| || | || |
Sbjct 451608 AGCAAAAAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTTGAGG 451549
Query 24040 TCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATAC 24099
||||| || ||||||||||| | ||||| ||||| ||||| ||||| || |
Sbjct 451548 TCGAGTCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCC 451489
Query 24100 CTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCA 24159
| || || || ||| || |||||| || ||| ||||| |||||||| | | | | |
Sbjct 451488 CACCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTACCTTAG 451429
Query 24160 GCGATTATAACATTCAAAAAGAATCTACAATTCA 24193
|||||| ||||| || || ||||| || ||||
Sbjct 451428 CCGATTACAACATCCAGAAGGAATCAACGCTTCA 451395
>seq912
Length=1276171
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||||| ||||| |||||| | ||||| || | || || |||| || |||
Sbjct 750930 ATGCAAGTTTTTGTGAAAACACTCACTGGTAAGACCATCACTCTCGAGGTTGAGAGTTCT 750989
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || || |||||| ||||| ||||| || ||||| || ||
Sbjct 750990 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAG 751049
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| ||| |||| | || || ||||| || ||||||| | | | | | ||||| ||
Sbjct 751050 CAAAGATTGATCTTCGCTGGTAAGCAGCTAGAAGATGGCCGTACCTTGGCTGATTACAAT 751109
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|| || |||||||| ||| | ||||| || | | || ||||| ||
Sbjct 751110 ATCCAGAAAGAATCAACACTCCATTTGGTTCTCCGGTTAAGAGGTGG 751156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429924267987045
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