Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq443 87.8 2e-12
seq530 84.2 2e-11
seq507 84.2 2e-11
>seq443
Length=3098630
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458
|||||| ||||| || |||| ||| || || ||||| ||||||| | ||| | |||||
Sbjct 1849481 TGATCAACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGGACCTTAGCCGA 1849540
Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514
||| ||||| || |||||||||||| | ||| | || ||||| | |||| ||||
Sbjct 1849541 TTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTGAGGCTCAGAGGTGGAA 1849596
>seq530
Length=553347
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| ||||||||||| || | || ||||| |||||||| | ||| |||| |
Sbjct 260214 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATTACTTTGGAAGTGGAGAGCTCT 260273
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| | ||||| || ||| || ||| || ||||| || | || || ||
Sbjct 260274 GACAC-CATCGACAATGTCAAAGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCA 260332
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| || | || | || || || ||| | ||||||| || ||| |||| ||||| ||
Sbjct 260333 GCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTTTGGCTGATTACAA 260392
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|||||| || ||||| ||| | || |||| ||| | | || |||||
Sbjct 260393 CATTCAGAAGGAGTCCACTCTTCACTTGGTCTTGCGTCTCCGTGGAGG 260440
>seq507
Length=413332
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||||||||| || ||||| ||||| || || |||||||| |||| ||| |
Sbjct 378291 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 378350
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| | | |||| || || ||| || || || ||||| | || ||| ||
Sbjct 378351 GACACCATCG-ACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCA 378409
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
|||||||||||| | ||| || ||||| | || |||| || |||||||||| ||
Sbjct 378410 GCAAAGACTTATCTTTGCTGGGAAACAGCTTGAGGATGGTCGTACTTTGGCCGATTACAA 378469
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494
||| || ||||| || ||| | || ||||
Sbjct 378470 CATCCAGAAAGAATCAACTCTCCACTTGGT 378499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425332393292680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |