Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 226 4e-54
seq415 143 3e-29
seq1009 82.4 1e-10
>seq1432
Length=495105
Score = 226 bits (250), Expect = 4e-54
Identities = 436/631 (69%), Gaps = 23/631 (4%)
Strand=Plus/Minus
Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714
|||||||| |||||||| ||||| ||||| |||||||| ||| |||||||| || ||
Sbjct 66079 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAAT 66020
Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 32773
|||||||| ||||||| || || || || | ||| ||||| || |||| | | |||||
Sbjct 66019 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGA 65961
Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC 32833
||||| || ||||| || ||||| || | | |||||| | | || ||
Sbjct 65960 GAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAG 65905
Query 32834 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889
|| || ||||| || ||||| || || ||||| | |||||||| ||||| || |
Sbjct 65904 ATCCGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGA 65845
Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949
| || |||||||| | | | || || | ||||| | || || || | | ||||
Sbjct 65844 TTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGAC 65785
Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009
||||||| || |||||||| || || || || ||||| |||||||||||| | ||| |
Sbjct 65784 TATACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTT 65725
Query 33010 CGGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068
| | | ||| || || | ||| |||||| || | ||| || || ||||||||
Sbjct 65724 CTGAGACCTGAACATC-GGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCT 65666
Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT--GTTAG 33124
|| || || || || | || ||||| || || | |||||| |||| || ||
Sbjct 65665 GATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAG 65606
Query 33125 TTTATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 33181
||| | ||| || |||| |||| ||| | ||| |||||||| | ||||| || ||
Sbjct 65605 TTT-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGA 65550
Query 33182 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241
|| || || || || ||||| | |||||| | | ||||| ||||| || ||| ||
Sbjct 65549 CGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAA 65490
Query 33242 TCTATTTGGATTTTTTGCAAGGATTGGTTCC 33272
|| || ||| || || ||||||||||||
Sbjct 65489 TCGATCTGGTGTTGGTGTTAGGATTGGTTCC 65459
>seq415
Length=609146
Score = 143 bits (158), Expect = 3e-29
Identities = 281/407 (69%), Gaps = 9/407 (2%)
Strand=Plus/Plus
Query 32850 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 32909
||||| | || ||||| || ||||| || || || || ||| |||||||| | |
Sbjct 100779 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 100838
Query 32910 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 32969
|||| || ||||||| | ||| ||||| | | ||||||||||| |||||||| |||
Sbjct 100839 CTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCCGAATGGATG 100898
Query 32970 TTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGGTAATCTGTACTTCTGT 33028
|||||||| || || || || |||||| ||||| | ||||| | | || || || |
Sbjct 100899 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCCGAGACTTGAACATC-GG 100956
Query 33029 ACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087
||| ||||| || | ||| || || |||||||| || || || || || |
Sbjct 100957 ACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGAAGAAAGCGA 101016
Query 33088 ATACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATA 33143
|||||||| || || | || |||| | | | | |||| | ||| || | |
Sbjct 101017 GGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCCAGTCGCGGTTG 101075
Query 33144 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 33203
|||| |||| ||| |||||||| | ||||| |||||||| || || ||||| |||||
Sbjct 101076 TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACATT 101135
Query 33204 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250
| |||||| | | || |||||||| || ||| ||||| | |||
Sbjct 101136 TCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 101182
Score = 102 bits (112), Expect = 1e-16
Identities = 281/426 (66%), Gaps = 6/426 (1%)
Strand=Plus/Plus
Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428
||| || || ||||| |||||||| || || || |||||||| |||| | || |||
Sbjct 100130 TTTCTGATAATCACCAACACGTTTCTCAAAGAAGTTAGTTTTCCCTTGAAGCGAGATAAG 100189
Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488
|||||| |||| || ||||| ||| || || | || | || | || |
Sbjct 100190 TTCCATCCAATCAAACGGATTAGTAGCACCGTACACCTTCCCGTACCCAAGCGCACCCAA 100249
Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AA 32547
| ||||| || ||||| || ||||| |||||| |||| ||||| || | ||
Sbjct 100250 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 100309
Query 32548 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607
|| ||||| || | | ||| ||| || || ||||||||| | |
Sbjct 100310 CGCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAAACGA 100368
Query 32608 TAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGC 32665
| ||| | || ||||||||| | | | | | || || || | | | ||| ||
Sbjct 100369 TTGATTTCACGCGTTCTTCACTTAGCTTAGTTTTGAGAAGCGTGTAGAGA--AGACAAGC 100426
Query 32666 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 32725
||||||||||||||| || ||||||| | || |||||||||||||| || ||||| ||
Sbjct 100427 GAAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCCAGG 100486
Query 32726 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 32785
||| || || || || || ||||| || || || ||| ||| || ||||| || ||
Sbjct 100487 CATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACC 100546
Query 32786 TTCTAC 32791
||| ||
Sbjct 100547 TTCAAC 100552
>seq1009
Length=3105692
Score = 82.4 bits (90), Expect = 1e-10
Identities = 90/117 (77%), Gaps = 2/117 (2%)
Strand=Plus/Minus
Query 62558 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617
|| ||||| || ||||| | ||||| | ||||||||||||||| ||||||| | | ||
Sbjct 1456760 AGGATAAATGCATCTGCAAGACCTTGTATACCAATACCGATAGGCCTATGTCGCATGTTT 1456701
Query 62618 GAGATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673
||| ||| ||| ||| | | ||||||| ||| | ||||||||| || || |||||
Sbjct 1456700 GAGGTTTTTGCTGTCTCCACT-GGATAATGATTCACATCTATAATCTTGTTAAGATT 1456645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633614266224400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |