Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1432 226 4e-54 seq415 143 3e-29 seq1009 82.4 1e-10 >seq1432 Length=495105 Score = 226 bits (250), Expect = 4e-54 Identities = 436/631 (69%), Gaps = 23/631 (4%) Strand=Plus/Minus Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 |||||||| |||||||| ||||| ||||| |||||||| ||| |||||||| || || Sbjct 66079 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAAT 66020 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 32773 |||||||| ||||||| || || || || | ||| ||||| || |||| | | ||||| Sbjct 66019 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGA 65961 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC 32833 ||||| || ||||| || ||||| || | | |||||| | | || || Sbjct 65960 GAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAG 65905 Query 32834 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 || || ||||| || ||||| || || ||||| | |||||||| ||||| || | Sbjct 65904 ATCCGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGA 65845 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 | || |||||||| | | | || || | ||||| | || || || | | |||| Sbjct 65844 TTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGAC 65785 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 ||||||| || |||||||| || || || || ||||| |||||||||||| | ||| | Sbjct 65784 TATACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTT 65725 Query 33010 CGGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 | | | ||| || || | ||| |||||| || | ||| || || |||||||| Sbjct 65724 CTGAGACCTGAACATC-GGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCT 65666 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT--GTTAG 33124 || || || || || | || ||||| || || | |||||| |||| || || Sbjct 65665 GATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAG 65606 Query 33125 TTTATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 33181 ||| | ||| || |||| |||| ||| | ||| |||||||| | ||||| || || Sbjct 65605 TTT-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGA 65550 Query 33182 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 || || || || || ||||| | |||||| | | ||||| ||||| || ||| || Sbjct 65549 CGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAA 65490 Query 33242 TCTATTTGGATTTTTTGCAAGGATTGGTTCC 33272 || || ||| || || |||||||||||| Sbjct 65489 TCGATCTGGTGTTGGTGTTAGGATTGGTTCC 65459 >seq415 Length=609146 Score = 143 bits (158), Expect = 3e-29 Identities = 281/407 (69%), Gaps = 9/407 (2%) Strand=Plus/Plus Query 32850 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 32909 ||||| | || ||||| || ||||| || || || || ||| |||||||| | | Sbjct 100779 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 100838 Query 32910 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 32969 |||| || ||||||| | ||| ||||| | | ||||||||||| |||||||| ||| Sbjct 100839 CTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCCGAATGGATG 100898 Query 32970 TTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGGTAATCTGTACTTCTGT 33028 |||||||| || || || || |||||| ||||| | ||||| | | || || || | Sbjct 100899 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCCGAGACTTGAACATC-GG 100956 Query 33029 ACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087 ||| ||||| || | ||| || || |||||||| || || || || || | Sbjct 100957 ACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGAAGAAAGCGA 101016 Query 33088 ATACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATA 33143 |||||||| || || | || |||| | | | | |||| | ||| || | | Sbjct 101017 GGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCCAGTCGCGGTTG 101075 Query 33144 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 33203 |||| |||| ||| |||||||| | ||||| |||||||| || || ||||| ||||| Sbjct 101076 TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACATT 101135 Query 33204 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250 | |||||| | | || |||||||| || ||| ||||| | ||| Sbjct 101136 TCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 101182 Score = 102 bits (112), Expect = 1e-16 Identities = 281/426 (66%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| || || ||||| |||||||| || || || |||||||| |||| | || ||| Sbjct 100130 TTTCTGATAATCACCAACACGTTTCTCAAAGAAGTTAGTTTTCCCTTGAAGCGAGATAAG 100189 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 |||||| |||| || ||||| ||| || || | || | || | || | Sbjct 100190 TTCCATCCAATCAAACGGATTAGTAGCACCGTACACCTTCCCGTACCCAAGCGCACCCAA 100249 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AA 32547 | ||||| || ||||| || ||||| |||||| |||| ||||| || | || Sbjct 100250 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 100309 Query 32548 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607 || ||||| || | | ||| ||| || || ||||||||| | | Sbjct 100310 CGCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAAACGA 100368 Query 32608 TAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGC 32665 | ||| | || ||||||||| | | | | | || || || | | | ||| || Sbjct 100369 TTGATTTCACGCGTTCTTCACTTAGCTTAGTTTTGAGAAGCGTGTAGAGA--AGACAAGC 100426 Query 32666 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 32725 ||||||||||||||| || ||||||| | || |||||||||||||| || ||||| || Sbjct 100427 GAAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCCAGG 100486 Query 32726 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 32785 ||| || || || || || ||||| || || || ||| ||| || ||||| || || Sbjct 100487 CATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACC 100546 Query 32786 TTCTAC 32791 ||| || Sbjct 100547 TTCAAC 100552 >seq1009 Length=3105692 Score = 82.4 bits (90), Expect = 1e-10 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 62558 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617 || ||||| || ||||| | ||||| | ||||||||||||||| ||||||| | | || Sbjct 1456760 AGGATAAATGCATCTGCAAGACCTTGTATACCAATACCGATAGGCCTATGTCGCATGTTT 1456701 Query 62618 GAGATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 ||| ||| ||| ||| | | ||||||| ||| | ||||||||| || || ||||| Sbjct 1456700 GAGGTTTTTGCTGTCTCCACT-GGATAATGATTCACATCTATAATCTTGTTAAGATT 1456645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633614266224400