Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1432 266 4e-66 seq415 140 4e-28 seq1130 93.3 5e-14 seq365 93.3 5e-14 seq1414 91.5 2e-13 seq1319 89.7 6e-13 seq977 84.2 2e-11 seq924 84.2 2e-11 seq2224 82.4 9e-11 seq955 82.4 9e-11 >seq1432 Length=495105 Score = 266 bits (294), Expect = 4e-66 Identities = 537/778 (69%), Gaps = 28/778 (4%) Strand=Plus/Minus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 |||||| |||||||| ||||| || ||||||||| ||||||||||| |||||| || | Sbjct 66248 CAATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAAC 66189 Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTT-- 93033 | | | ||| || || |||||| | || ||| ||||||| |||| || || Sbjct 66188 CA-AGGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAA 66130 Query 93034 CAA--GATTTCTATTACTCTACTATTTGG--TGGTTTTTGTACGACATAATTGTACATTA 93089 ||| |||||| | ||||| || | | ||| | | ||| | || || | Sbjct 66129 CAATCGATTTCAAACGTTCTAC-ATCAAGCTTAGTTCTAAGAAGAC-----TATAGATCA 66076 Query 93090 AGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTA 93149 | || || || || || | ||||||||||| || ||||| || || |||||| | Sbjct 66075 AACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGA 66016 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | | ||||||||||| | ||| ||||| ||| ||| |||||||| || | Sbjct 66015 GTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGA 65956 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA-TTTGCGGAATTACTG 93268 |||||||||| ||| ||||| || || || | || || || |||| | || | | Sbjct 65955 ATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAG--AT--CCG 65900 Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 |||||||||| | ||||| || ||||| ||| | | |||||| | ||||||||| ||| Sbjct 65899 TTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCG 65840 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 ||| || | ||||| ||| | ||| ||||| || |||| | ||| |||| Sbjct 65839 CGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATAC 65780 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 || |||||||| | |||||| ||||| ||||||||||||||||| | |||||| | | Sbjct 65779 ATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAG 65720 Query 93449 ATCTGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 | ||| || || || | |||| | |||||| || || || || || ||||| Sbjct 65719 ACCTGAACATC-GGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGC 65661 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATC 93564 || || || || | | || || || || || || || | | || || || Sbjct 65660 GGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTC 65601 Query 93565 CCAATCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 ||| ||| ||| | |||| || ||||||||||||||| | ||||| || || ||||| | Sbjct 65600 CCAGTCGCGATTG-TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGG 65542 Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGAT 93680 |||| |||||||| ||||| || | | | ||||| ||||| || || ||| || |||| Sbjct 65541 CTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACAT-ACAGAATCGAT 65485 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 450559 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 450616 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| |||||||| |||||| Sbjct 450617 GCGTGGGTTCAAACCCCACTTCTGACA 450643 >seq415 Length=609146 Score = 140 bits (154), Expect = 4e-28 Identities = 313/462 (68%), Gaps = 10/462 (2%) Strand=Plus/Plus Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA 93272 ||||||| ||| || || || | || |||||||| ||| || || | | | || Sbjct 100711 TACCTTCGACGCAAGCGAAAGCGATGATTCGTTCGGCGAAAGTTTGAGA--TCCATC-GA 100767 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 ||||||| | ||||| | ||||| ||| | ||||| | ||||| || || || Sbjct 100768 TCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAA 100827 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | || | ||||| || | |||| || || ||||||| | ||| |||||| | Sbjct 100828 AGAGATGATCTCTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCT 100887 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 | ||||||| || || || || || ||||| ||||||||| | || |||| || | Sbjct 100888 CCGAATGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTT 100947 Query 93453 GCACTTCTTGAGAA-AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511 | || || || | |||| ||||||| || || || || |||||||| || Sbjct 100948 GAACATCG-GACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCG 101006 Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTAT---CCCAA 93568 || ||||| | | ||| || || || || ||| | || || || || | |||| Sbjct 101007 AAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAG 101066 Query 93569 TCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 ||| | | | |||| ||| ||||| |||||||| | ||||| || |||||||| ||||| Sbjct 101067 TCGCGGTTG-TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTT 101125 Query 93628 TTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 ||||||||| ||||| || | | | || |||||||| || || Sbjct 101126 TTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACAT 101167 Score = 102 bits (112), Expect = 9e-17 Identities = 207/304 (68%), Gaps = 10/304 (3%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 ||||| || ||||| || || |||||| ||||||||||| ||||| || | | ||| Sbjct 100254 CTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCA-ACGC 100312 Query 92984 ACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 || || || |||||| || || ||| |||||||| | || || || | |||| Sbjct 100313 GCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAAACGATTGA 100372 Query 93043 TATTAC----TCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 | | || ||| | || | | ||||| | | |||| | | || || | Sbjct 100373 TTTCACGCGTTCTTCACTTAGCTTAGTTTTG----AGAAGCGTGTAGAGAAGACAAGCGA 100428 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | ||| |||| ||||||||||| || ||||| || ||| ||||||| || || | Sbjct 100429 AATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCCAGGCA 100488 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 |||||||||||||| ||||| || |||||| ||| || || || || || ||||||| Sbjct 100489 TGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTT 100548 Query 93219 CCAC 93222 | || Sbjct 100549 CAAC 100552 >seq1130 Length=598358 Score = 93.3 bits (102), Expect = 5e-14 Identities = 76/90 (84%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 |||||| ||||||||||||||||||||||||| ||||| |||||| | || || | || Sbjct 186950 AGTCAGTATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCTCTTACGAGGGC 186891 Query 126323 GTGGGTTCGAACCCCACACCTGACA-AATT 126351 |||||||| |||||||| |||||| |||| Sbjct 186890 GTGGGTTCAAACCCCACTGCTGACACAATT 186861 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 187129 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 187072 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| |||||||| ||||||| Sbjct 187071 GCGTGGGTTCAAACCCCACTTCTGACAA 187044 >seq365 Length=1485341 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/93 (83%), Gaps = 6/93 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 1390563 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 1390506 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||| || ||||| |||||||||| || Sbjct 1390505 CGTGGGTTCAAATCCCACTTCTGACAAATTGTT 1390473 >seq1414 Length=453102 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||||||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 364059 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 364002 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || |||||| |||||| Sbjct 364001 GCGTGGGTTCAAATCCCACATCTGACA 363975 >seq1319 Length=682241 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/94 (82%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 529732 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 529789 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| |||||||| ||||||| || || Sbjct 529790 GCGTGGGTTCAAACCCCACTTCTGACAATTTGTT 529823 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/94 (81%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAGCG 126323 |||| ||||||||||||||||||||||||| | ||| |||||| |||| | | ||| Sbjct 529825 CAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGGGCG 529882 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| |||||||| ||||||| || || || Sbjct 529883 TGGGTTCAAACCCCACTTCTGACAATTTGTTTTT 529916 >seq977 Length=908535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/90 (82%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 155160 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 155103 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| | ||||||| Sbjct 155102 GGGTTCAAATCCCACAGCTGTC-AATTATT 155074 >seq924 Length=609823 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 538428 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 538371 Query 126328 TTCGAACCCCACACCTGACAAAT 126350 ||| || |||||| ||| ||||| Sbjct 538370 TTCAAATCCCACAGCTGTCAAAT 538348 >seq2224 Length=2289173 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1349402 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1349345 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 1349344 GGGTTCAAATCCCACAGCTGTCAA 1349321 >seq955 Length=1083107 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/107 (79%), Gaps = 7/107 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 381948 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 381891 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTAT-TGGAAttttt 126366 |||||||||| || ||||| |||||| | ||| | | ||||||| Sbjct 381890 GCGTGGGTTCAAATCCCACTTCTGACATTTCATTTTATTAAATTTTT 381844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556845214858360