Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 266 4e-66
seq415 140 4e-28
seq1130 93.3 5e-14
seq365 93.3 5e-14
seq1414 91.5 2e-13
seq1319 89.7 6e-13
seq977 84.2 2e-11
seq924 84.2 2e-11
seq2224 82.4 9e-11
seq955 82.4 9e-11
>seq1432
Length=495105
Score = 266 bits (294), Expect = 4e-66
Identities = 537/778 (69%), Gaps = 28/778 (4%)
Strand=Plus/Minus
Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976
|||||| |||||||| ||||| || ||||||||| ||||||||||| |||||| || |
Sbjct 66248 CAATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAAC 66189
Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTT-- 93033
| | | ||| || || |||||| | || ||| ||||||| |||| || ||
Sbjct 66188 CA-AGGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAA 66130
Query 93034 CAA--GATTTCTATTACTCTACTATTTGG--TGGTTTTTGTACGACATAATTGTACATTA 93089
||| |||||| | ||||| || | | ||| | | ||| | || || |
Sbjct 66129 CAATCGATTTCAAACGTTCTAC-ATCAAGCTTAGTTCTAAGAAGAC-----TATAGATCA 66076
Query 93090 AGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTA 93149
| || || || || || | ||||||||||| || ||||| || || |||||| |
Sbjct 66075 AACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGA 66016
Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209
|| || | | ||||||||||| | ||| ||||| ||| ||| |||||||| || |
Sbjct 66015 GTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGA 65956
Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA-TTTGCGGAATTACTG 93268
|||||||||| ||| ||||| || || || | || || || |||| | || | |
Sbjct 65955 ATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAG--AT--CCG 65900
Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328
|||||||||| | ||||| || ||||| ||| | | |||||| | ||||||||| |||
Sbjct 65899 TTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCG 65840
Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388
||| || | ||||| ||| | ||| ||||| || |||| | ||| ||||
Sbjct 65839 CGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATAC 65780
Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448
|| |||||||| | |||||| ||||| ||||||||||||||||| | |||||| | |
Sbjct 65779 ATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAG 65720
Query 93449 ATCTGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507
| ||| || || || | |||| | |||||| || || || || || |||||
Sbjct 65719 ACCTGAACATC-GGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGC 65661
Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATC 93564
|| || || || | | || || || || || || || | | || || ||
Sbjct 65660 GGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTC 65601
Query 93565 CCAATCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623
||| ||| ||| | |||| || ||||||||||||||| | ||||| || || ||||| |
Sbjct 65600 CCAGTCGCGATTG-TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGG 65542
Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGAT 93680
|||| |||||||| ||||| || | | | ||||| ||||| || || ||| || ||||
Sbjct 65541 CTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACAT-ACAGAATCGAT 65485
Score = 86.0 bits (94), Expect = 7e-12
Identities = 72/87 (83%), Gaps = 6/87 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 450559 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 450616
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| |||||||| ||||||
Sbjct 450617 GCGTGGGTTCAAACCCCACTTCTGACA 450643
>seq415
Length=609146
Score = 140 bits (154), Expect = 4e-28
Identities = 313/462 (68%), Gaps = 10/462 (2%)
Strand=Plus/Plus
Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA 93272
||||||| ||| || || || | || |||||||| ||| || || | | | ||
Sbjct 100711 TACCTTCGACGCAAGCGAAAGCGATGATTCGTTCGGCGAAAGTTTGAGA--TCCATC-GA 100767
Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332
||||||| | ||||| | ||||| ||| | ||||| | ||||| || || ||
Sbjct 100768 TCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAA 100827
Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392
| || | ||||| || | |||| || || ||||||| | ||| |||||| |
Sbjct 100828 AGAGATGATCTCTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCT 100887
Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452
| ||||||| || || || || || ||||| ||||||||| | || |||| || |
Sbjct 100888 CCGAATGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTT 100947
Query 93453 GCACTTCTTGAGAA-AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511
| || || || | |||| ||||||| || || || || |||||||| ||
Sbjct 100948 GAACATCG-GACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCG 101006
Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTAT---CCCAA 93568
|| ||||| | | ||| || || || || ||| | || || || || | ||||
Sbjct 101007 AAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAG 101066
Query 93569 TCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627
||| | | | |||| ||| ||||| |||||||| | ||||| || |||||||| |||||
Sbjct 101067 TCGCGGTTG-TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTT 101125
Query 93628 TTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669
||||||||| ||||| || | | | || |||||||| || ||
Sbjct 101126 TTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACAT 101167
Score = 102 bits (112), Expect = 9e-17
Identities = 207/304 (68%), Gaps = 10/304 (3%)
Strand=Plus/Plus
Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983
||||| || ||||| || || |||||| ||||||||||| ||||| || | | |||
Sbjct 100254 CTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCA-ACGC 100312
Query 92984 ACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042
|| || || |||||| || || ||| |||||||| | || || || | ||||
Sbjct 100313 GCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAAACGATTGA 100372
Query 93043 TATTAC----TCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098
| | || ||| | || | | ||||| | | |||| | | || || |
Sbjct 100373 TTTCACGCGTTCTTCACTTAGCTTAGTTTTG----AGAAGCGTGTAGAGAAGACAAGCGA 100428
Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158
| ||| |||| ||||||||||| || ||||| || ||| ||||||| || || |
Sbjct 100429 AATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCCAGGCA 100488
Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218
|||||||||||||| ||||| || |||||| ||| || || || || || |||||||
Sbjct 100489 TGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTT 100548
Query 93219 CCAC 93222
| ||
Sbjct 100549 CAAC 100552
>seq1130
Length=598358
Score = 93.3 bits (102), Expect = 5e-14
Identities = 76/90 (84%), Gaps = 3/90 (3%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
|||||| ||||||||||||||||||||||||| ||||| |||||| | || || | ||
Sbjct 186950 AGTCAGTATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCTCTTACGAGGGC 186891
Query 126323 GTGGGTTCGAACCCCACACCTGACA-AATT 126351
|||||||| |||||||| |||||| ||||
Sbjct 186890 GTGGGTTCAAACCCCACTGCTGACACAATT 186861
Score = 87.8 bits (96), Expect = 2e-12
Identities = 73/88 (83%), Gaps = 6/88 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 187129 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 187072
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348
|||||||||| |||||||| |||||||
Sbjct 187071 GCGTGGGTTCAAACCCCACTTCTGACAA 187044
>seq365
Length=1485341
Score = 93.3 bits (102), Expect = 5e-14
Identities = 77/93 (83%), Gaps = 6/93 (6%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 1390563 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 1390506
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354
||||||||| || ||||| |||||||||| ||
Sbjct 1390505 CGTGGGTTCAAATCCCACTTCTGACAAATTGTT 1390473
>seq1414
Length=453102
Score = 91.5 bits (100), Expect = 2e-13
Identities = 73/87 (84%), Gaps = 6/87 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||||||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 364059 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 364002
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || |||||| ||||||
Sbjct 364001 GCGTGGGTTCAAATCCCACATCTGACA 363975
>seq1319
Length=682241
Score = 89.7 bits (98), Expect = 6e-13
Identities = 77/94 (82%), Gaps = 6/94 (6%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 529732 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 529789
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||||||| |||||||| ||||||| || ||
Sbjct 529790 GCGTGGGTTCAAACCCCACTTCTGACAATTTGTT 529823
Score = 86.0 bits (94), Expect = 7e-12
Identities = 76/94 (81%), Gaps = 6/94 (6%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAGCG 126323
|||| ||||||||||||||||||||||||| | ||| |||||| |||| | | |||
Sbjct 529825 CAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGGGCG 529882
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||| |||||||| ||||||| || || ||
Sbjct 529883 TGGGTTCAAACCCCACTTCTGACAATTTGTTTTT 529916
>seq977
Length=908535
Score = 84.2 bits (92), Expect = 2e-11
Identities = 74/90 (82%), Gaps = 3/90 (3%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 155160 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 155103
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||| || |||||| ||| | |||||||
Sbjct 155102 GGGTTCAAATCCCACAGCTGTC-AATTATT 155074
>seq924
Length=609823
Score = 84.2 bits (92), Expect = 2e-11
Identities = 69/83 (83%), Gaps = 2/83 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 538428 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 538371
Query 126328 TTCGAACCCCACACCTGACAAAT 126350
||| || |||||| ||| |||||
Sbjct 538370 TTCAAATCCCACAGCTGTCAAAT 538348
>seq2224
Length=2289173
Score = 82.4 bits (90), Expect = 9e-11
Identities = 69/84 (82%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 1349402 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1349345
Query 126325 GGGTTCGAACCCCACACCTGACAA 126348
|||||| || |||||| ||| |||
Sbjct 1349344 GGGTTCAAATCCCACAGCTGTCAA 1349321
>seq955
Length=1083107
Score = 82.4 bits (90), Expect = 9e-11
Identities = 84/107 (79%), Gaps = 7/107 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 381948 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 381891
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTAT-TGGAAttttt 126366
|||||||||| || ||||| |||||| | ||| | | |||||||
Sbjct 381890 GCGTGGGTTCAAATCCCACTTCTGACATTTCATTTTATTAAATTTTT 381844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556845214858360
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