Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1180 93.3 4e-14 >seq1180 Length=4302264 Score = 93.3 bits (102), Expect = 4e-14 Identities = 188/275 (68%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || ||||| || || | || | ||||| || ||||||||||| || ||||| | | Sbjct 2204457 ACGTGAGCGAGAATGCATGTAAGAAGGGAGTATGATGCAATGTTAAATGGTACTCCGAGA 2204398 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| || || || || || || |||||||| Sbjct 2204397 CCCATATCGGCTGAACGCTGATACATTTGACATGACAGTTCTCCATCTGCAACATAAAAC 2204338 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||| ||||||| | | || | || ||||| || Sbjct 2204337 TGTGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGATCAGAAGGATTCCAAGCC 2204278 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||| || || | || ||| | ||||| || || || | ||| || || || | Sbjct 2204277 GACATTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTGAAT-TAC-ATCTA--A 2204222 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || ||||| || || || ||||| ||||||| Sbjct 2204221 GAGCTGATCAAATCCTTGCCCCGTATAATCAGCAT 2204187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441360447078760