Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1013 102 6e-17 seq788 87.8 1e-12 seq530 82.4 6e-11 >seq1013 Length=1118043 Score = 102 bits (112), Expect = 6e-17 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||| || ||||||| ||||||||| || ||||| ||||||||||| || Sbjct 384608 ACCTCCTCTCAGACGTAGCACCAAATGAAGCGTCGATTCTTTCTGGATGTTGTAATCAGC 384667 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || |||| |||||||| || ||||| || |||| || ||||||||| || Sbjct 384668 GAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGG 384727 Query 34020 CACGCTCTCTTTGTCCATAATTTT---TTGCTTAATGGAACTC-ACACTATCAGTAGATT 34075 | | || ||||| ||| || || | | || || | | || | |||| Sbjct 384728 GATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTG----TCGATTGTGTCTGATGATT 384783 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || | |||||||| || || ||||| |||||||| ||||| |||||||| Sbjct 384784 CAACCTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 384838 >seq788 Length=1574065 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| || | ||||| |||||| || |||||||||||||||||| || || Sbjct 100816 ACCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGC 100757 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || |||| || | |||||| ||||| || |||| | |||||| ||| || Sbjct 100756 CAAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 100697 Query 34020 CACGCTCTCTTTGTCC 34035 | | |||||||||| Sbjct 100696 AATACCCTCTTTGTCC 100681 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| || | ||||| |||||| || |||||||||||||||||| || || Sbjct 108252 ACCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGC 108193 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || |||| || | |||||| ||||| || |||| | |||||| ||| || Sbjct 108192 CAAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 108133 Query 34020 CACGCTCTCTTTGTCC 34035 | | |||||||||| Sbjct 108132 AATACCCTCTTTGTCC 108117 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || |||| ||||| ||||| || ||||||||| ||||||||||| || Sbjct 101044 ACCTCCACGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGC 100985 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| || |||| ||||| ||||| ||||| || |||| | |||||| ||| Sbjct 100984 CAAGGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCC 100930 >seq530 Length=553347 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || |||| |||| ||||| ||| ||||||||||||||||||||| || Sbjct 260441 ACCTCCACGGAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGC 260382 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || | || || | |||||| ||||| || |||| | |||||| ||| || Sbjct 260381 CAAAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 260322 Query 34020 CACGCTCTCTTTGTC 34034 | | ||||||||| Sbjct 260321 AATACCCTCTTTGTC 260307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397051565035678