Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq1013 102 6e-17
seq788 87.8 1e-12
seq530 82.4 6e-11
>seq1013
Length=1118043
Score = 102 bits (112), Expect = 6e-17
Identities = 165/235 (70%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||||||||| || ||||||| ||||||||| || ||||| ||||||||||| ||
Sbjct 384608 ACCTCCTCTCAGACGTAGCACCAAATGAAGCGTCGATTCTTTCTGGATGTTGTAATCAGC 384667
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| | || |||| |||||||| || ||||| || |||| || ||||||||| ||
Sbjct 384668 GAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGG 384727
Query 34020 CACGCTCTCTTTGTCCATAATTTT---TTGCTTAATGGAACTC-ACACTATCAGTAGATT 34075
| | || ||||| ||| || || | | || || | | || | ||||
Sbjct 384728 GATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTG----TCGATTGTGTCTGATGATT 384783
Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130
| || | |||||||| || || ||||| |||||||| ||||| ||||||||
Sbjct 384784 CAACCTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 384838
>seq788
Length=1574065
Score = 87.8 bits (96), Expect = 1e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||| | ||| || | ||||| |||||| || |||||||||||||||||| || ||
Sbjct 100816 ACCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGC 100757
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
||| || |||| || | |||||| ||||| || |||| | |||||| ||| ||
Sbjct 100756 CAAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 100697
Query 34020 CACGCTCTCTTTGTCC 34035
| | ||||||||||
Sbjct 100696 AATACCCTCTTTGTCC 100681
Score = 87.8 bits (96), Expect = 1e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||| | ||| || | ||||| |||||| || |||||||||||||||||| || ||
Sbjct 108252 ACCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGC 108193
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
||| || |||| || | |||||| ||||| || |||| | |||||| ||| ||
Sbjct 108192 CAAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 108133
Query 34020 CACGCTCTCTTTGTCC 34035
| | ||||||||||
Sbjct 108132 AATACCCTCTTTGTCC 108117
Score = 82.4 bits (90), Expect = 6e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||| | || |||| ||||| ||||| || ||||||||| ||||||||||| ||
Sbjct 101044 ACCTCCACGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGC 100985
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
||| || |||| ||||| ||||| ||||| || |||| | |||||| |||
Sbjct 100984 CAAGGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCC 100930
>seq530
Length=553347
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||| | || |||| |||| ||||| ||| ||||||||||||||||||||| ||
Sbjct 260441 ACCTCCACGGAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGC 260382
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
||| || | || || | |||||| ||||| || |||| | |||||| ||| ||
Sbjct 260381 CAAAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 260322
Query 34020 CACGCTCTCTTTGTC 34034
| | |||||||||
Sbjct 260321 AATACCCTCTTTGTC 260307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397051565035678
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |