Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq415 129 1e-24
seq1180 86.0 1e-11
seq550 86.0 1e-11
>seq415
Length=609146
Score = 129 bits (142), Expect = 1e-24
Identities = 285/424 (67%), Gaps = 4/424 (1%)
Strand=Plus/Minus
Query 243316 TGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA 243375
|| ||||||||||| | || ||||| || || || | ||||| ||||| ||| |
Sbjct 100555 TGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGA 100496
Query 243376 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCAC 243435
|| | |||||||| || | || ||||| || ||| ||| ||||| || || |||
Sbjct 100495 GGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCTCGAGACGAAGGACTACAC 100436
Query 243436 CAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGA-AACG-G 243493
| |||| | ||| | || | ||| | | |||||| | | | |||| |
Sbjct 100435 TGCGATTTCGCTTGTCTTCTCTACACGCTTCTCAAAACTAAGCTA--AGTGAAGAACGCG 100378
Query 243494 TCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTC 243553
| ||| |||| | || || || |||| ||| | || || | |||||||| |||
Sbjct 100377 TGAAATCAATCGTTTGCGACGCGGTCGAAATCGAGAGAGAGTTTGTGTGCGACGCGCTTC 100318
Query 243554 CATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCG 243613
| ||| | | |||| |||||| ||| | ||| | ||||| || || || || || |
Sbjct 100317 CGTGCGCGTTGGTTGGGATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCGG 100258
Query 243614 ACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCT 243673
| | |||| |||||||| || | ||| |||||| | | || || |||| |
Sbjct 100257 ATAGGCTTTTGGGTGCGCTTGGGTACGGGAAGGTGTACGGTGCTACTAATCCGTTTGATT 100198
Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATT 243733
||||| || || |||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 100197 GGATGGAACTTATCTCGCTTCAAGGGAAAACTAACTTCTTTGAGAAACGTGTTGGTGATT 100138
Query 243734 ATCA 243737
||||
Sbjct 100137 ATCA 100134
>seq1180
Length=4302264
Score = 86.0 bits (94), Expect = 1e-11
Identities = 121/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 30983 TCCTTGCGAATTGCTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATACCGAACACTTTT 31042
||| | |||| ||||||| ||||||||||| | || || | || ||| | | |
Sbjct 2246714 TCCCTACGAACCTCTTCTTCCTCCTCGGGTGTAAAATCATTCTTAATGTTGAAAAGTGTA 2246655
Query 31043 CGAATCTCTTCCGGAGtttttccttttattttttCAGCGATAGCTTGACATAGAACATCA 31102
||||||||||| ||| | || ||||| || | || || |||| ||||||| | ||||
Sbjct 2246654 CGAATCTCTTCTGGATTCTTGCCTTTGATCATATCCGCAATAGTTTGACATGTGAGATCA 2246595
Query 31103 AGCATACTCTTTATGTTCAAGAAATTCGCTCCTTGAATCAGTTCGAAGAT 31152
|||| || || ||||| | | ||||||| | |||| || || |||||
Sbjct 2246594 AGCAAGCTTTTGATGTTTAGGTAATTCGCAGCAAGAATGAGATCAAAGAT 2246545
>seq550
Length=16702
Score = 86.0 bits (94), Expect = 1e-11
Identities = 121/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 30983 TCCTTGCGAATTGCTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATACCGAACACTTTT 31042
||| | |||| ||||||| ||||||||||| | || || | || ||| | | |
Sbjct 9687 TCCCTACGAACCTCTTCTTCCTCCTCGGGTGTAAAATCATTCTTAATGTTGAAAAGTGTA 9746
Query 31043 CGAATCTCTTCCGGAGtttttccttttattttttCAGCGATAGCTTGACATAGAACATCA 31102
||||||||||| ||| | || ||||| || | || || |||| ||||||| | ||||
Sbjct 9747 CGAATCTCTTCTGGATTCTTGCCTTTGATCATATCCGCAATAGTTTGACATGTGAGATCA 9806
Query 31103 AGCATACTCTTTATGTTCAAGAAATTCGCTCCTTGAATCAGTTCGAAGAT 31152
|||| || || ||||| | | ||||||| | |||| || || |||||
Sbjct 9807 AGCAAGCTTTTGATGTTTAGGTAATTCGCAGCAAGAATGAGATCAAAGAT 9856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102848361474650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |