Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq415 129 1e-24 seq1180 86.0 1e-11 seq550 86.0 1e-11 >seq415 Length=609146 Score = 129 bits (142), Expect = 1e-24 Identities = 285/424 (67%), Gaps = 4/424 (1%) Strand=Plus/Minus Query 243316 TGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA 243375 || ||||||||||| | || ||||| || || || | ||||| ||||| ||| | Sbjct 100555 TGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGA 100496 Query 243376 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCAC 243435 || | |||||||| || | || ||||| || ||| ||| ||||| || || ||| Sbjct 100495 GGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCTCGAGACGAAGGACTACAC 100436 Query 243436 CAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGA-AACG-G 243493 | |||| | ||| | || | ||| | | |||||| | | | |||| | Sbjct 100435 TGCGATTTCGCTTGTCTTCTCTACACGCTTCTCAAAACTAAGCTA--AGTGAAGAACGCG 100378 Query 243494 TCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTC 243553 | ||| |||| | || || || |||| ||| | || || | |||||||| ||| Sbjct 100377 TGAAATCAATCGTTTGCGACGCGGTCGAAATCGAGAGAGAGTTTGTGTGCGACGCGCTTC 100318 Query 243554 CATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCG 243613 | ||| | | |||| |||||| ||| | ||| | ||||| || || || || || | Sbjct 100317 CGTGCGCGTTGGTTGGGATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCGG 100258 Query 243614 ACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCT 243673 | | |||| |||||||| || | ||| |||||| | | || || |||| | Sbjct 100257 ATAGGCTTTTGGGTGCGCTTGGGTACGGGAAGGTGTACGGTGCTACTAATCCGTTTGATT 100198 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATT 243733 ||||| || || |||||||||||||||||||||||||| || || ||||| |||||| Sbjct 100197 GGATGGAACTTATCTCGCTTCAAGGGAAAACTAACTTCTTTGAGAAACGTGTTGGTGATT 100138 Query 243734 ATCA 243737 |||| Sbjct 100137 ATCA 100134 >seq1180 Length=4302264 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 30983 TCCTTGCGAATTGCTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATACCGAACACTTTT 31042 ||| | |||| ||||||| ||||||||||| | || || | || ||| | | | Sbjct 2246714 TCCCTACGAACCTCTTCTTCCTCCTCGGGTGTAAAATCATTCTTAATGTTGAAAAGTGTA 2246655 Query 31043 CGAATCTCTTCCGGAGtttttccttttattttttCAGCGATAGCTTGACATAGAACATCA 31102 ||||||||||| ||| | || ||||| || | || || |||| ||||||| | |||| Sbjct 2246654 CGAATCTCTTCTGGATTCTTGCCTTTGATCATATCCGCAATAGTTTGACATGTGAGATCA 2246595 Query 31103 AGCATACTCTTTATGTTCAAGAAATTCGCTCCTTGAATCAGTTCGAAGAT 31152 |||| || || ||||| | | ||||||| | |||| || || ||||| Sbjct 2246594 AGCAAGCTTTTGATGTTTAGGTAATTCGCAGCAAGAATGAGATCAAAGAT 2246545 >seq550 Length=16702 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 30983 TCCTTGCGAATTGCTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATACCGAACACTTTT 31042 ||| | |||| ||||||| ||||||||||| | || || | || ||| | | | Sbjct 9687 TCCCTACGAACCTCTTCTTCCTCCTCGGGTGTAAAATCATTCTTAATGTTGAAAAGTGTA 9746 Query 31043 CGAATCTCTTCCGGAGtttttccttttattttttCAGCGATAGCTTGACATAGAACATCA 31102 ||||||||||| ||| | || ||||| || | || || |||| ||||||| | |||| Sbjct 9747 CGAATCTCTTCTGGATTCTTGCCTTTGATCATATCCGCAATAGTTTGACATGTGAGATCA 9806 Query 31103 AGCATACTCTTTATGTTCAAGAAATTCGCTCCTTGAATCAGTTCGAAGAT 31152 |||| || || ||||| | | ||||||| | |||| || || ||||| Sbjct 9807 AGCAAGCTTTTGATGTTTAGGTAATTCGCAGCAAGAATGAGATCAAAGAT 9856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102848361474650