Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 91.5 2e-13
seq866 89.7 6e-13
>seq1432
Length=495105
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
||| ||||| ||||| | || || | ||| || ||||| ||||| ||||| | |||
Sbjct 66059 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACC 66000
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
|| |||||||||||||| |||| |||||| ||| |||||||| || || || || ||
Sbjct 65999 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCA 65940
Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAG 126205
|| || || | || | |||||| |||
Sbjct 65939 AGCAAAAGCTACGATTCTCTCAGCGAAG 65912
>seq866
Length=976259
Score = 89.7 bits (98), Expect = 6e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 8648 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTC 8707
||||||||||||| | || |||||||| || || ||| || | ||||||||||||||
Sbjct 345314 GAATTACCGAGAAGCGTACGGTCTCTTCGCATGTAACGGAATCTTGTTCAACCACGAGTC 345373
Query 8708 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC 8746
||| || ||||| | |||||||||| | |||||||||
Sbjct 345374 ACCTCGCCGTGGTGAGAATTTCGTGACGAGGAAGATCAC 345412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597336881566120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |