Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1127 98.7 1e-15 >seq1127 Length=645582 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| | |||| || |||| || || || | ||||| |||||||||||||| Sbjct 573855 GTAGGATAAGCAGCACAAGTGAGAACAAACCCTTCACCAATCTGTTCATCATCAAGGAAA 573914 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 ||| || ||||| || | || || | | ||| || ||||| |||||||| | | Sbjct 573915 CTTTGGTCAGACTGATCAACAGATCCAGACACAACTTTACCAGCACAGCTCGAACAAGAA 573974 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 ||||| ||||| ||||| | || || || ||||| || || || || |||| ||| Sbjct 573975 CCAGCACGGCAAGAGTATGGCAAATCGATTCCAGCTTCCTCGGCCGCGTCAAGAACGTAA 574034 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| ||||||||| Sbjct 574035 ACGTCGTCGTCACACTCAA 574053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622107388282160