Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq894 122 1e-22 >seq894 Length=3336090 Score = 122 bits (134), Expect = 1e-22 Identities = 273/406 (67%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || || |||||||||||||||| ||| ||||| | ||| ||||| | ||||||||| | Sbjct 2654831 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 2654890 Query 12849 GGCATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACG 12905 |||| || | | | |||| |||| || || || ||||| || | |||||| Sbjct 2654891 CC---ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACA 2654947 Query 12906 ATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 12965 || || || |||||| ||| || || | ||| || ||||| |||||| ||| Sbjct 2654948 ATGCATGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACTCTTGAGGCACCAACA 2655007 Query 12966 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTC 13024 || ||||||||||| ||||| | | | | | || | | |||||| || || ||| Sbjct 2655008 CCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGCACACCGGCTTC 2655066 Query 13025 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGC 13084 ||| || |||||| || || ||||| ||||| || || || || | || || | Sbjct 2655067 ACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAAC 2655126 Query 13085 ACCACGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCAC 13144 ||| ||||||| ||||||| | || | | | ||| || | || ||||| ||||| Sbjct 2655127 ACCTTTGGGGATCCGGGCACCAACTGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 2655186 Query 13145 GATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTCA 13190 | ||| || || | ||| || |||||| || |||| ||| Sbjct 2655187 CACTTCCATGAAATCCTGCTTGGCTTCGTCGACTCCAGCAACATCA 2655232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613490029467240