Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq894 122 1e-22
>seq894
Length=3336090
Score = 122 bits (134), Expect = 1e-22
Identities = 273/406 (67%), Gaps = 8/406 (2%)
Strand=Plus/Plus
Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848
|| || |||||||||||||||| ||| ||||| | ||| ||||| | ||||||||| |
Sbjct 2654831 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 2654890
Query 12849 GGCATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACG 12905
|||| || | | | |||| |||| || || || ||||| || | ||||||
Sbjct 2654891 CC---ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACA 2654947
Query 12906 ATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 12965
|| || || |||||| ||| || || | ||| || ||||| |||||| |||
Sbjct 2654948 ATGCATGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACTCTTGAGGCACCAACA 2655007
Query 12966 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTC 13024
|| ||||||||||| ||||| | | | | | || | | |||||| || || |||
Sbjct 2655008 CCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGCACACCGGCTTC 2655066
Query 13025 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGC 13084
||| || |||||| || || ||||| ||||| || || || || | || || |
Sbjct 2655067 ACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAAC 2655126
Query 13085 ACCACGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCAC 13144
||| ||||||| ||||||| | || | | | ||| || | || ||||| |||||
Sbjct 2655127 ACCTTTGGGGATCCGGGCACCAACTGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 2655186
Query 13145 GATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTCA 13190
| ||| || || | ||| || |||||| || |||| |||
Sbjct 2655187 CACTTCCATGAAATCCTGCTTGGCTTCGTCGACTCCAGCAACATCA 2655232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613490029467240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |