Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq895 113 5e-20 seq1206 107 2e-18 seq788 105 8e-18 seq912 98.7 1e-15 seq1891 96.9 4e-15 seq400 96.9 4e-15 seq713 93.3 5e-14 seq530 91.5 2e-13 seq980 87.8 2e-12 seq507 86.0 7e-12 >seq895 Length=2238827 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || |||||| ||||| |||||||||| || || || |||| || Sbjct 1033409 ACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCC 1033468 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| || |||||||| ||||| ||||||||||| | || | | |||||||| | Sbjct 1033469 AGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGG 1033528 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| || | | | | || ||| |||||| || || | || ||||| || Sbjct 1033529 ATCTTCGCTTTCACATTGTCGATGGTATCGGACGATTCAACCTCTAGGGTTATGGTCTTC 1033588 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||| || ||||| || ||||| ||||| || Sbjct 1033589 CCCGTTAGGGTTTTCACGAAGATCTGCATCTT 1033620 >seq1206 Length=1516661 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| |||| || || || |||| ||||||||||| |||||||| Sbjct 451407 TCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 451466 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | | |||||||| |||||| ||||| | Sbjct 451467 ATCAATCGCTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 451526 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || || || || | ||||| || || ||||| || ||||| || Sbjct 451527 TCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACG 451586 Query 46583 AAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 451587 AAGATCTGCATCTT 451600 >seq788 Length=1574065 Score = 105 bits (116), Expect = 8e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| ||||||| ||| | ||| |||||| || || |||||||| | Sbjct 100815 CCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 100756 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | |||| || || ||||| |||||||| ||||| | ||||||||| | || Sbjct 100755 AAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 100696 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||| |||||| |||||| |||| | | | ||||| |||| ||| Sbjct 100695 ATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTC---TCC 100639 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| || || || |||| ||| || || ||||||||||| Sbjct 100638 ACCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 100589 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || |||||| |||| || | || |||||| ||||| |||||||| | Sbjct 693574 CCACCACGTAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 693515 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || || ||||||||||||||||| ||||| | ||||||||| | || Sbjct 693514 AAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 693455 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | || ||||| ||| |||||| ||||| ||| | | | || || |||| || Sbjct 693454 ATGCCTTCCTTATCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTATCAGAGCTC---TC 693399 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||||| || || || || || || || ||||| ||||| Sbjct 693398 TACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 693348 Score = 102 bits (112), Expect = 9e-17 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| ||||||| ||| | ||| |||||| || || |||||||| | Sbjct 108251 CCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 108192 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | |||| || || ||||| |||||||| ||||| | ||||||||| | || Sbjct 108191 AAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 108132 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||| |||||| |||||| |||| | | | ||||| |||| || Sbjct 108131 ATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTC---TCY 108075 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| || || || |||| ||| || || ||||||||||| Sbjct 108074 ACCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 108025 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || ||||| | || || ||||| || || ||||| Sbjct 693767 CTCCTTCTGGATGTTGTAGTCAGCTAAGGTGCGGCCATCCTCAAGCTGTTTTCCAGCGAA 693708 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || ||||||||| |||||| ||| | | Sbjct 693707 GATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 693648 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| ||||| || | |||||||| || || |||| || || Sbjct 693647 GTCAATGGTGTCTGAGCTC---TCCACTTCAAGGGTGATGGTCTTACCGGTCAAAGTCTT 693591 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 693590 GACAAAGATCTGCAT 693576 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| | ||| || | || ||||||||||| || ||||| Sbjct 693995 CTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTCGAGCTGCTTTCCAGCGAA 693936 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||| ||| |||||| ||| | ||| Sbjct 693935 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTTA-CGT 693877 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| ||||| |||| ||||| || || || ||||| || | Sbjct 693876 TGTCAATGGTGTCGGAGCTC---TCCACCTCCAGTGTGATAGTCTTCCCGGTCAGAGTCT 693820 Query 46578 TAACAAAGATTTGCAT 46593 | || || || ||||| Sbjct 693819 TCACGAAAATCTGCAT 693804 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| || | ||| |||||| ||||| |||||||| | | ||| ||| | || || Sbjct 108690 CACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGCCCATCCTC 108631 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||| || || ||||| || | ||||||||||| | || | || ||||||||| Sbjct 108630 AAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTG 108571 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGG 46559 |||||| ||| | ||| | | | ||||| |||| || || || | ||||| | Sbjct 108570 GATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGAGCTC---TCGACTTCAAGAGTGATCG 108515 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| |||| || || || ||||| ||||| Sbjct 108514 TCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 108481 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||||| || | || |||||| ||||| ||||| || | Sbjct 101043 CCTCCACGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 100984 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || |||| || | |||||| |||||||| ||||| | ||||||||| | || Sbjct 100983 AAGGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 100924 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||||| ||| |||||| ||| ||| | | | ||||| ||| || Sbjct 100923 ATACCTTCCTTATCCTGGATCTT-GGCTTTCACGTTGTCGATGGTGTCTGAACTC---TC 100868 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| |||||||| || || || || || || ||||| || ||||| Sbjct 100867 CACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 100817 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | | ||| || | || || |||||||| || ||||| Sbjct 101236 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAA 101177 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| |||||| ||| | ||| Sbjct 101176 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGT 101118 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| ||||| || | |||||||| || || |||| || | Sbjct 101117 TGTCAATGGTGTCGGAGCTC---TCCACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTCT 101061 Query 46578 TAACAAAGATTTGCAT 46593 | || || || ||||| Sbjct 101060 TCACGAAAATCTGCAT 101045 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||||| || | || |||||| ||||| ||||| || | Sbjct 108479 CCTCCACGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 108420 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | ||| || |||||||| ||||| | ||||||||| | || Sbjct 108419 AAGGTACGACCATCCTCCAACTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 108360 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||||| ||| |||||| ||| | ||| | | | ||||| ||| || Sbjct 108359 ATACCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATAGTGTCTGAACTC---TC 108304 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| |||||||| || || || || || || ||||| || ||||| Sbjct 108303 CACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 108253 >seq912 Length=1276171 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||||| | |||| || |||||||| || ||||| Sbjct 751349 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTTCCGTCCTCAAGCTGCTTACCAGCGAA 751290 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | | ||||||||| ||||| ||||| ||| Sbjct 751289 AATAAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGAATCTTTGCCTTGA-CGT 751231 Query 46522 CGCCACC-GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | || ||||| ||| || || | |||||||||||||| ||||| || || | Sbjct 751230 TGTCAATAGTGTCAGAACTTTCAACCTCAAGGGTGATGGTTTTGCCAGTCAGAGTCTTGA 751171 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 751170 CAAAGATCTGCAT 751158 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | ||||| ||| | || ||| |||||||| |||||||| | Sbjct 751612 CCACCTCTGAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGCC 751553 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||| || || || || | | ||||||||| | || Sbjct 751552 AGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 751493 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||| || ||| ||||| |||| | | | ||||| |||| || Sbjct 751492 ATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTC---TCA 751436 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||| ||||| ||||| || || || |||||||||||||| Sbjct 751435 ACCTCTAGAGTGATTGTTTTACCCGTGAGAGTCTTCACAAAGATTTGCAT 751386 Score = 86.0 bits (94), Expect = 7e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | ||| |||||||||||| ||||| || | ||||| || | Sbjct 751829 ACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCTGCAAGAGTCCGACC 751770 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||| || || || || || | | ||||||||| | || | | ||||| Sbjct 751769 ATCTTCGAGCTGTTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTT 751710 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 ||| ||||| ||||| | | | ||||| |||| || || |||| || Sbjct 751709 GTCTTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTC---TCAACCTCCAAAGT 751653 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || ||||| || || || || |||||||| ||||| Sbjct 751652 GATAGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 751614 >seq1891 Length=27579 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | || ||| || | || |||||||| || || ||||| Sbjct 10312 CTCCTTCTGGATGTTGTAATCAGCTAAAGTCCGACCATCCTCGAGCTGTTTACCAGCGAA 10371 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||| ||||| | || | | |||||||||| ||||| ||||| | Sbjct 10372 GATGAGTCTCTGTTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTTAGCCTTGACATT 10431 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || |||| ||| ||||| ||||| |||| ||||| Sbjct 10432 ATCGATTGTGTCTGAGCTC---TCAACCTCCAACGTAATGGTCTTGCCTGTCAAAGTTTT 10488 Query 46579 AACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 10489 CACAAAGATTTGCAT 10503 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/243 (68%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||||||| | | |||| ||| | ||| ||||| ||||||||||| |||| Sbjct 11417 CCACCTCTTAACCTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCGGCC 11476 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || ||||| || |||||||| ||||| | ||||||||| | || Sbjct 11477 AAGGTACGACCATCCTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 11536 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||||| ||| ||||| ||||| | | | ||||| |||| || Sbjct 11537 ATACCTTCCTTATCCTGAATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTC---TCA 11593 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCACAAA 46603 || || | || ||||| ||||| || || ||||| || || |||||||| | | | ||| Sbjct 11594 ACCTCGAGAGTAATGGTCTTGCCAGTAAGTGTTTTCACGAAAATTTGCATCTGGAAAAAA 11653 Query 46604 CAA 46606 || Sbjct 11654 AAA 11656 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | ||||| ||| | ||| ||| || ||||||||||| || | Sbjct 10961 CCACCTCTGAGACGAAGCACCAAATGGAGGGTAGACTCTTTCTGGATATTGTAATCAGCG 11020 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || |||||||| || || || || | | |||||| || | || Sbjct 11021 AGTGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 11080 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGA---TTC 46542 | | ||||||||| ||||| ||| | | | | | | ||| || ||| ||| Sbjct 11081 ATTCCTTCCTTGTCCTGAATCTT-AGCTTTAACATTGTCAATCGTATC---CGAACTTTC 11136 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || |||||||| || |||| || || |||||||| ||||| Sbjct 11137 AACCTCCAAAGTAATGGTTTTCCCTGTCAATGTCTTCACAAAGATCTGCAT 11187 >seq400 Length=13612 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||||||||| | |||| || | || || || ||||||||||| |||| Sbjct 2047 CCACCTCTTAAACGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCC 2106 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || ||||| || |||||||| || || | ||||||||| | || Sbjct 2107 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGA 2166 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | || ||||||||| ||||| ||| | | | | ||||| |||| || Sbjct 2167 ATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTC---TCA 2223 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| ||||| || || ||||| |||||||||||||| Sbjct 2224 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 2273 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | ||||| || | || || ||||| || || ||||| Sbjct 1170 CTCCTTCTGGATGTTGTAATCTGCAAGAGTCCGACCATCCTCAAGCTGTTTTCCAGCGAA 1229 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||| || | || | | ||||||||| |||||| ||||| | Sbjct 1230 GATGAGTCTCTGCTGATCCGGAGGGATCCCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 1289 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || |||| || || || ||||| |||| ||||| Sbjct 1290 ATCAATTGTGTCTGAGCTC---TCAACCTCCAAGGTAATAGTCTTGCCTGTCAAAGTTTT 1346 Query 46579 AACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 1347 CACAAAGATTTGCAT 1361 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | ||||| ||| | || ||| || ||||| |||||||| | | Sbjct 1591 CCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCT 1650 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || |||||||| ||||| || || | | ||||||||| | || Sbjct 1651 AGGGTACGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 1710 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||| || ||| ||||| |||| | | | ||||| |||| || Sbjct 1711 ATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTC---TCA 1767 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||| ||||| || || || || || |||||||||||||| Sbjct 1768 ACCTCGAGGGTGATTGTTTTACCAGTGAGAGTCTTGACAAAGATTTGCAT 1817 >seq713 Length=176098 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | || ||| || | || |||||||| || || ||||| Sbjct 46405 CTCCTTCTGGATGTTGTAATCAGCTAAAGTCCGACCATCCTCGAGCTGTTTACCAGCGAA 46346 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||| ||||| | || | | |||||||||| ||||| ||||| | Sbjct 46345 GATGAGTCTCTGTTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTTAGCCTTGACATT 46286 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || |||| || ||||| ||||| |||| ||||| Sbjct 46285 ATCGATTGTGTCTGAGCTC---TCAACCTCCAAMGTAATGGTCTTGCCTGTCAAAGTTTT 46229 Query 46579 AACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 46228 CACAAAGATTTGCAT 46214 >seq530 Length=553347 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | | |||||| | || || |||||||| || ||||| Sbjct 260633 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 260574 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| |||||| ||| | ||| Sbjct 260573 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 260515 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| || || |||| ||||| || || || || || || | Sbjct 260514 TGTCAATGGTGTCAGAGCTC---TCTACCTCCAAGGTGATAGTCTTTCCAGTGAGAGTCT 260458 Query 46578 TAACAAAGATTTGCAT 46593 | |||||||| ||||| Sbjct 260457 TCACAAAGATCTGCAT 260442 >seq980 Length=1630315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | || ||| || | || |||||||| || || ||||| Sbjct 1975 CTCCTTCTGGATGTTGTAATCAGCTAAAGTCCGACCATCCTCGAGCTGTTTACCAGCGAA 2034 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||| ||||| | || | | |||||||||| ||||| ||||| | Sbjct 2035 GATGAGTCTCTGTTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTTAGCCTTGACRTT 2094 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || |||| || || || ||||| |||| || || Sbjct 2095 ATCGATTGTGTCTGAGCTC---TCAACCTCCAAVGTAATRGTCTTGCCTGTCAAAGTYTT 2151 Query 46579 AACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 2152 CACAAAGATTTGCAT 2166 >seq507 Length=413332 Score = 86.0 bits (94), Expect = 7e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | |||| |||||||||||| ||||| || | || || || | Sbjct 378962 ACGAAGCACAAGATGGAGTGTAGACTCCTTTTGGATGTTGTAATCCGCAAGTGTCCGACC 378903 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| || || ||||| || | | ||||||||| | || | | ||||| Sbjct 378902 ATCTTCAAGCTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCCGGTGGGATCCCTTCCTT 378843 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 ||| ||||| ||||| | | | |||||| |||| || || |||| || Sbjct 378842 GTCTTGAATCTTAGCCTTGACATTATCAATCGTGTCTGAGCTC---TCAACCTCCAAAGT 378786 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| ||||| || || || || || || || ||||| Sbjct 378785 GATGGTCTTGCCGGTAAGGGTCTTCACGAAAATCTGCAT 378747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565222580390280