Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq530 107 1e-18 seq1013 102 6e-17 seq400 93.3 3e-14 seq687 89.7 4e-13 seq1780 86.0 4e-12 seq507 84.2 2e-11 >seq530 Length=553347 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||| || | ||| ||| || || ||||| ||||| ||||| ||| |||| Sbjct 259969 AGAACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAATCAGCCAACGTGCGACCATCC 259910 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||| ||||| ||| | ||||| | | ||||||||||| || | |||||| ||||| Sbjct 259909 TCCAACTGTTTTCCGGCGAAAATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 259850 Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || |||| ||| | | | ||||| | ||||||||| || | || || || Sbjct 259849 TGGATCTTGGCCTTAA-CGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAGT 259791 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || | ||| || |||||||||||||| Sbjct 259790 CTTACCGGTGAGAGTCTTAACGAAGATCTGCAT 259758 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | |||| || || || || || ||||| ||| Sbjct 260440 CCTCCACGGAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCC 260381 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | |||| || | ||| || ||| | || || || | |||||| |||| || Sbjct 260380 AAAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 260321 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || |||||||| || || ||| | | |||| | ||||| | ||| |||| Sbjct 260320 ATACCCTCTTTGTCTTGAATCTTGGCTTTGACATTGTCGATG--GTGTCAGAGCTCTCCA 260263 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||||||||| || || || || || || || || || |||||||| Sbjct 260262 CTTCCAAAGTAATGGTCTTTCCTGTCAATGTCTTGACAAAAATCTGCAT 260214 >seq1013 Length=1118043 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| || |||||||| | || |||||| || || || ||||| || Sbjct 384609 CCTCCTCTCAGACGTAGCACCAAATGAAGCGTCGATTCTTTCTGGATGTTGTAATCAGCG 384668 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | || ||||||||||| ||| | || || || || |||||||||| || Sbjct 384669 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 384728 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| | || || | | || |||| | |||||||| ||| | Sbjct 384729 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCG--ATTGTGTCTGATGATTCAA 384786 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || ||||| || ||||||| ||||| |||||||||||||| Sbjct 384787 CCTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 384835 >seq400 Length=13612 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| || ||||| || | || |||||| || ||||| ||||||||| Sbjct 2047 CCACCTCTTAAACGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCC 2106 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| || | ||||| ||| | || ||||| | |||||| |||| || Sbjct 2107 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGA 2166 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| || ||| ||| || |||| | ||||| | ||| || | Sbjct 2167 ATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCG--ATGGTGTCAGAGCTCTCAA 2224 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || || || || | ||||| || ||||| ||||| Sbjct 2225 CCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 2273 >seq687 Length=897029 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||||| || | || |||||||| ||||| ||||| ||| Sbjct 268068 CCACCTCTCAACCTAAGAACCAAGTGAAGGGTTGACTCTTTTTGAATATTGTAATCAGCC 268009 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || | || || | |||||| ||| |||| || | | |||||| |||| || Sbjct 268008 AAAGTACGACCGTCCTCAAGTTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGCGGG 267949 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| || ||| || | | | | |||||| | |||||| || Sbjct 267948 ATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGCTTTCGACC 267889 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || || || || || | ||| || |||||||||||||| Sbjct 267888 TCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 267842 Score = 82.4 bits (90), Expect = 5e-11 Identities = 153/224 (68%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 39499 CGCAAA--CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAA 39556 |||||| || || |||||||| | ||| |||||| || || || ||||| || | Sbjct 268520 CGCAAAGACGAAGAACCAAATGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCAAGGG 268461 Query 39557 CGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGC 39616 ||| |||| || | ||| || || | || || | | |||||| |||| || | | Sbjct 268460 TGCGACCATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGCTGGTCCGGAGGGATCC 268401 Query 39617 CTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCA 39676 |||| || || || || ||||| | | | |||||||| ||| || || |||| Sbjct 268400 CTTCCTTATCTTGAATCTTAGCTTTAACATTGTCAATTGTGTCTGAGCTCTCAACCTCCA 268341 Query 39677 AAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||| || ||||| || | | ||||| || |||||||||||| Sbjct 268340 AAGTTATGGTTTTGCCAATGAGGGTTTTCACAAAGATCTGCATG 268297 >seq1780 Length=424430 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || || ||||| || ||| ||| |||| || | || |||||| |||| Sbjct 96810 TCTTTCTGGATGTTGTAATCCGCTAAAGTGCGACCATCTTCAAGCTGCTTCCCGGCAAAG 96869 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATC 39645 |||| | ||||||||||| || | ||||||||||| | | | |||| || | || Sbjct 96870 ATTAGCCTCTGCTGATCCGGTGGGATCCCTTCTTTGTC-CTGAATCTTTGCCTTCACATT 96928 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 || | | || || | ||||||||| || | || || || || ||||| ||||| || Sbjct 96929 GT--CAATGGTATCAGAGCTTTCCACTTCAAGCGTGATGGTCTTTCCCGTCAAAGTCTTG 96986 Query 39706 ACGAAGATCTGCAT 39719 || || |||||||| Sbjct 96987 ACAAATATCTGCAT 97000 >seq507 Length=413332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| || ||||| || | ||| |||||| || || || ||||||||| Sbjct 378517 CCACCTCTTAAACGAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCGGCC 378458 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| || | |||||||| |||| || | | ||||| || | || Sbjct 378457 AAAGTACGACCATCCTCAAGCTGTTTCCCAGCAAAGATAAGTCTTTGCTGGTCAGGAGGA 378398 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || ||| ||| || |||| | ||||| | ||| || | Sbjct 378397 ATACCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCG--ATGGTGTCAGAGCTCTCAA 378340 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | |||||| || || || || | ||||| ||||| || ||||| Sbjct 378339 CCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 378291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347360121043487