Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq530 107 1e-18
seq1013 102 6e-17
seq400 93.3 3e-14
seq687 89.7 4e-13
seq1780 86.0 4e-12
seq507 84.2 2e-11
>seq530
Length=553347
Score = 107 bits (118), Expect = 1e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567
|| ||||| || | ||| ||| || || ||||| ||||| ||||| ||| ||||
Sbjct 259969 AGAACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAATCAGCCAACGTGCGACCATCC 259910
Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627
||||| ||||| ||| | ||||| | | ||||||||||| || | |||||| |||||
Sbjct 259909 TCCAACTGTTTTCCGGCGAAAATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 259850
Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686
|| || |||| ||| | | | ||||| | ||||||||| || | || || ||
Sbjct 259849 TGGATCTTGGCCTTAA-CGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAGT 259791
Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| || | ||| || ||||||||||||||
Sbjct 259790 CTTACCGGTGAGAGTCTTAACGAAGATCTGCAT 259758
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||||| ||||| || | |||| || || || || || ||||| |||
Sbjct 260440 CCTCCACGGAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCC 260381
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| | |||| || | ||| || ||| | || || || | |||||| |||| ||
Sbjct 260380 AAAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 260321
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| || |||||||| || || ||| | | |||| | ||||| | ||| ||||
Sbjct 260320 ATACCCTCTTTGTCTTGAATCTTGGCTTTGACATTGTCGATG--GTGTCAGAGCTCTCCA 260263
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| ||||||||||| || || || || || || || || || ||||||||
Sbjct 260262 CTTCCAAAGTAATGGTCTTTCCTGTCAATGTCTTGACAAAAATCTGCAT 260214
>seq1013
Length=1118043
Score = 102 bits (112), Expect = 6e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| || ||| || |||||||| | || |||||| || || || ||||| ||
Sbjct 384609 CCTCCTCTCAGACGTAGCACCAAATGAAGCGTCGATTCTTTCTGGATGTTGTAATCAGCG 384668
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | | | || ||||||||||| ||| | || || || || |||||||||| ||
Sbjct 384669 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 384728
Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||| ||||| | || || | | || |||| | |||||||| ||| |
Sbjct 384729 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCG--ATTGTGTCTGATGATTCAA 384786
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || || || ||||| || ||||||| ||||| ||||||||||||||
Sbjct 384787 CCTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 384835
>seq400
Length=13612
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| ||||| || ||||| || | || |||||| || ||||| |||||||||
Sbjct 2047 CCACCTCTTAAACGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCC 2106
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| || |||| || | ||||| ||| | || ||||| | |||||| |||| ||
Sbjct 2107 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGA 2166
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| |||||| ||||| || ||| ||| || |||| | ||||| | ||| || |
Sbjct 2167 ATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCG--ATGGTGTCAGAGCTCTCAA 2224
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || | ||| || || || || || | ||||| || ||||| |||||
Sbjct 2225 CCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 2273
>seq687
Length=897029
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| ||| | || ||||| || | || |||||||| ||||| ||||| |||
Sbjct 268068 CCACCTCTCAACCTAAGAACCAAGTGAAGGGTTGACTCTTTTTGAATATTGTAATCAGCC 268009
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| || | || || | |||||| ||| |||| || | | |||||| |||| ||
Sbjct 268008 AAAGTACGACCGTCCTCAAGTTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGCGGG 267949
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||||| ||||| || ||| || | | | | |||||| | |||||| ||
Sbjct 267948 ATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGCTTTCGACC 267889
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | ||| || || || || || | ||| || ||||||||||||||
Sbjct 267888 TCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 267842
Score = 82.4 bits (90), Expect = 5e-11
Identities = 153/224 (68%), Gaps = 2/224 (1%)
Strand=Plus/Minus
Query 39499 CGCAAA--CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAA 39556
|||||| || || |||||||| | ||| |||||| || || || ||||| || |
Sbjct 268520 CGCAAAGACGAAGAACCAAATGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCAAGGG 268461
Query 39557 CGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGC 39616
||| |||| || | ||| || || | || || | | |||||| |||| || | |
Sbjct 268460 TGCGACCATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGCTGGTCCGGAGGGATCC 268401
Query 39617 CTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCA 39676
|||| || || || || ||||| | | | |||||||| ||| || || ||||
Sbjct 268400 CTTCCTTATCTTGAATCTTAGCTTTAACATTGTCAATTGTGTCTGAGCTCTCAACCTCCA 268341
Query 39677 AAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
|||| || ||||| || | | ||||| || ||||||||||||
Sbjct 268340 AAGTTATGGTTTTGCCAATGAGGGTTTTCACAAAGATCTGCATG 268297
>seq1780
Length=424430
Score = 86.0 bits (94), Expect = 4e-12
Identities = 138/194 (71%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
||||| || || || ||||| || ||| ||| |||| || | || |||||| ||||
Sbjct 96810 TCTTTCTGGATGTTGTAATCCGCTAAAGTGCGACCATCTTCAAGCTGCTTCCCGGCAAAG 96869
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATC 39645
|||| | ||||||||||| || | ||||||||||| | | | |||| || | ||
Sbjct 96870 ATTAGCCTCTGCTGATCCGGTGGGATCCCTTCTTTGTC-CTGAATCTTTGCCTTCACATT 96928
Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705
|| | | || || | ||||||||| || | || || || || ||||| ||||| ||
Sbjct 96929 GT--CAATGGTATCAGAGCTTTCCACTTCAAGCGTGATGGTCTTTCCCGTCAAAGTCTTG 96986
Query 39706 ACGAAGATCTGCAT 39719
|| || ||||||||
Sbjct 96987 ACAAATATCTGCAT 97000
>seq507
Length=413332
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| ||||| || ||||| || | ||| |||||| || || || |||||||||
Sbjct 378517 CCACCTCTTAAACGAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCGGCC 378458
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| || |||| || | |||||||| |||| || | | ||||| || | ||
Sbjct 378457 AAAGTACGACCATCCTCAAGCTGTTTCCCAGCAAAGATAAGTCTTTGCTGGTCAGGAGGA 378398
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||| ||||| || ||| ||| || |||| | ||||| | ||| || |
Sbjct 378397 ATACCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCG--ATGGTGTCAGAGCTCTCAA 378340
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || | |||||| || || || || | ||||| ||||| || |||||
Sbjct 378339 CCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 378291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347360121043487
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |