Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq894 136 5e-27 seq1757 122 1e-22 seq772 109 7e-19 seq945 107 2e-18 seq1432 104 3e-17 seq415 91.5 2e-13 seq1009 89.7 6e-13 >seq894 Length=3336090 Score = 136 bits (150), Expect = 5e-27 Identities = 333/498 (67%), Gaps = 20/498 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | ||| ||||| || || | | || ||||| Sbjct 2654744 CGGTCAAACCGTCCTGGCCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2654803 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | || | || ||| || |||| ||||||||||||||||| |||| ||||| Sbjct 2654804 GCCACTACGATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGA 2654860 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058 |||| || ||||| | ||||||||| || |||| |||| | | |||| | Sbjct 2654861 TTAAGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTA 2654917 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || ||||| || ||||| | ||| || |||||||| |||||| || || Sbjct 2654918 CCAACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTG 2654977 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || ||||| || || | ||| || ||||| ||||||||||| ||||| | | | Sbjct 2654978 AAAAGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCC 2655037 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 | | || | | |||||| ||| | |||||| ||||||||| || || || || || Sbjct 2655038 G-AGATGGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAGCAGGGTTTT 2655096 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 16297 || ||||| || ||| | ||||| ||||| || ||| ||| ||| | || Sbjct 2655097 CCCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACTGCAGT 2655156 Query 16298 GTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCC---AATTCATCTTTGGCGGC 16354 | | |||||||| | ||| ||||| ||||| | ||||| || || | ||||| | Sbjct 2655157 GAACCTCTCAGGCTTCTTCAGAAACTCCAC---CACTTCCATGAAATCCTGCTTGGCTTC 2655213 Query 16355 GTCAATCCCCTCAACATC 16372 ||| | || ||||||| Sbjct 2655214 GTCGACTCCAGCAACATC 2655231 >seq1757 Length=376612 Score = 122 bits (134), Expect = 1e-22 Identities = 283/418 (68%), Gaps = 14/418 (3%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCA 15974 |||||| || || | | ||| ||||| || | || | || ||| |||| | || || Sbjct 158882 ATCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTT--CA 158825 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 |||||||||||||| || | ||||| || | || ||||| | ||||||||| || Sbjct 158824 AAACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCTCC- 158766 Query 16035 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 |||| || | | | |||| | || || ||||| || ||||| | ||||| ||| Sbjct 158765 --ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATG 158708 Query 16092 CATGGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 || || || || || ||| ||| ||||| || || | ||| || ||||| Sbjct 158707 CAAGGAGCGTTCTCCTTGGCTTTCTTGAAA-AGATCACGGACTCTTGAGGCACCAACACC 158649 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 ||||||||||| ||||| | | | || || | || ||| || ||| || ||||| Sbjct 158648 GACAAACATCTCAACAAACTCAGAACCAGAG-ATGGAGAAGAAAGGCACACCAGCTTCAC 158590 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | ||||||||| || | ||| || || || ||||| || ||| ||||| ||| Sbjct 158589 CAGCAATGGCTTTTGCCAAAAGGGTTTTCCCAGTACCAGGGGGACCAATAAGGAGAACAC 158530 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 || ||||||||||| ||| || | ||||||| |||| ||| ||||| ||||| Sbjct 158529 CTTTCGGAATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCAC 158472 >seq772 Length=329654 Score = 109 bits (120), Expect = 7e-19 Identities = 198/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||||||||| ||||| || ||||| | |||||||| | Sbjct 253388 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 253331 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | ||| ||||| | | |||| | ||||| ||||||||||||||||| || || || Sbjct 253330 CCACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACAATA 253271 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || ||||| || || ||||| | ||||| || || || | || ||||| Sbjct 253270 CAAGG--AGCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCCAC 253215 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||| | ||||||||| | | || | ||| | ||| || || | ||| Sbjct 253214 ACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCTGCTTC 253155 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | ||| ||||| |||||||| || Sbjct 253154 TCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 253113 >seq945 Length=941802 Score = 107 bits (118), Expect = 2e-18 Identities = 198/282 (70%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| | ||| |||||||| ||||| | |||||||| || Sbjct 882099 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 882156 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| | || || || ||||||||||||||||| || || Sbjct 882157 CCTCCCATCCCAGCTCCTCTCTGCCTCCCAACAGCGTCAATCTCATCAATGAATACAATA 882216 Query 16092 CATGGTTGATTTTCGC-GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 16148 || || || ||| | ||| || || | ||||| || || || | || |||||| Sbjct 882217 CAAGG-TGCTTTCGACTTAGCCTTCTCGAACAAATCCC-TA-ACTCTAGATGCACCCACA 882273 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 |||||||| | ||||||||| | || ||| | || || ||| || || | || Sbjct 882274 CCAACAAAAAGCTCCACAAACTCTGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCCTCC 882333 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 || || | || | || || || |||||||||||||| ||| Sbjct 882334 CCAGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 882375 >seq1432 Length=495105 Score = 104 bits (114), Expect = 3e-17 Identities = 165/236 (70%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 102087 CAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATG 102146 || |||||| || ||| ||||| |||| ||| | |||||||| || ||||| ||| Sbjct 65829 CATCTCTTTCGCGCAATCGAAACAATTCCTTGTGTGACGAAGAAAGCAGAATGGGCAATG 65888 Query 102147 AAGTGGTTTGATACAAAG--TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTG 102204 || ||| | ||| | || | ||| |||||| || || | || ||||| || | Sbjct 65889 AAATGGAT-----CAACGGATCTCAAAGCTTCGCTGAGAGAATCGTAGCTTTTGCTTGCG 65943 Query 102205 TTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTC 102264 |||| ||||| |||||||||||| ||| || | || | ||| | ||||| |||||| Sbjct 65944 TTGAAGGTATATTCTTCTCTGGTAGCTTTTGTTCGATATTCTGGTTGAAGAAACGAGGTT 66003 Query 102265 TCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 | ||||| || ||| ||||| ||||| | || || | ||||| || || ||| Sbjct 66004 TAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCAC 66059 >seq415 Length=609146 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 102201 TGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGA 102260 |||||||| |||||||||||||| || ||| || | || | ||||| ||||| ||| Sbjct 100555 TGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGA 100496 Query 102261 GGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || |||||||| || || || |||||||| | |||||||| ||||| ||||| ||| Sbjct 100495 GGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCTCGAGACGAAGGACTACAC 100436 >seq1009 Length=3105692 Score = 89.7 bits (98), Expect = 6e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 113188 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCA 113247 ||||||||||||| |||||||| |||| || |||||||| |||||| ||||| || || Sbjct 1457629 TTGACATGGCCGCCGATCGTGGATGCTTTATAGATCAAAGCCAAAGTTTGAATATACACA 1457688 Query 113248 TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGG 113304 |||||| |||| | | || ||| ||||| | ||| | ||| |||||| |||| Sbjct 1457689 TGGAAAAGCCAAACTTTGCAAAACTCACTTCTTTACACTTCTACGCTTGGAAAAAGG 1457745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620725026972080