Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq894 105 8e-18 seq415 98.7 1e-15 seq1180 91.5 2e-13 seq1163 91.5 2e-13 >seq894 Length=3336090 Score = 105 bits (116), Expect = 8e-18 Identities = 325/497 (65%), Gaps = 18/497 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || ||||| | || | ||| |||||||| || | | ||| || || Sbjct 2654744 CGGTCAAACCGTCCTGGCCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2654803 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || | || | || ||||| | | || ||||| ||||| || || || ||||| || Sbjct 2654804 GCCACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 2654863 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG-CTT--CTTACCG 11679 | |||||||| | ||||| || | | |||| | | | | ||| | |||| Sbjct 2654864 AGGGTCTGTTCTCTTTCATCATT--ACCTCC-ACCAATTCCAGTTCCTCTTTGCCTACCA 2654920 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 ||||| || || ||||| | ||| || || || || || | || | || |||| Sbjct 2654921 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 2654980 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || || || || | || |||||||| || ||||||||||| || | ||||| Sbjct 2654981 AGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACT------CAGAA 2655034 Query 11800 CAC----TG--AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | | || || |||||| ||| | |||||||| |||||| || || || || Sbjct 2655035 CCCGAGATGGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAGCAGGGTT 2655094 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCA 11913 || || |||||||| | |||| | || || | || ||||||| ||||||| | || Sbjct 2655095 TTCCCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACTGCA 2655154 Query 11914 AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAG 11973 | | | |||||||||||| || || ||||| | ||| | |||| |||||| | Sbjct 2655155 GTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATGAAATCCTGCTTGGCTTCG 2655214 Query 11974 TCGATACCCTCAACATC 11990 |||| || ||||||| Sbjct 2655215 TCGACTCCAGCAACATC 2655231 >seq415 Length=609146 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || ||||| || |||||||| | || || || |||||||||||||||||| Sbjct 100437 TGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCCAGGCATGAGTCCT 100496 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 | |||||||||||| ||||| | |||||| ||||| || |||||||| || || ||||| Sbjct 100497 CGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTTCAACACA 100555 >seq1180 Length=4302264 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| ||| || Sbjct 912105 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGATCCCTGTA 912046 Query 136777 GGGAACAGCTTTTAGATATATTTTTTGT 136804 | || |||| ||||||||||||| Sbjct 912045 TAGGCCACTTTTTTTATATATTTTTTGT 912018 >seq1163 Length=414626 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGG 111051 ||||| | || ||||| ||||||||||| |||| | |||||| |||||| | || Sbjct 27072 TGAGGCCTTGGAGTTCCTGCATTGAAGAGAATAGGAGATGCATGAGTGAACAATCTCTGA 27131 Query 111052 GACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCA 111111 |||||| | ||| || | || ||| || | ||||| |||||| |||| | | Sbjct 27132 GACATCAAATGGTAAGTTTTGATTGCAGAATCAATATCTTCCATGTGAATGCCAACAGAA 27191 Query 111112 ACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAA 111171 |||| ||||| ||| | ||||||| |||| | | || |||| || | ||||| Sbjct 27192 ACTCTCATGAGCATGTGTTGAGGCCTTTCAACAACTTTCCCATGGACTTTCAAGAGGTAC 27251 Query 111172 CTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 | |||| || || || | |||||||| || |||| |||||||| || Sbjct 27252 AACCTCTCAAGTGTTTTAAATCCAAAGTAATCATAATCAAAATCACGGTC 27301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588959516034200