Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq894 105 8e-18
seq415 98.7 1e-15
seq1180 91.5 2e-13
seq1163 91.5 2e-13
>seq894
Length=3336090
Score = 105 bits (116), Expect = 8e-18
Identities = 325/497 (65%), Gaps = 18/497 (4%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|| || || || ||||| | || | ||| |||||||| || | | ||| || ||
Sbjct 2654744 CGGTCAAACCGTCCTGGCCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2654803
Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
|| | || | || ||||| | | || ||||| ||||| || || || ||||| ||
Sbjct 2654804 GCCACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 2654863
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG-CTT--CTTACCG 11679
| |||||||| | ||||| || | | |||| | | | | ||| | ||||
Sbjct 2654864 AGGGTCTGTTCTCTTTCATCATT--ACCTCC-ACCAATTCCAGTTCCTCTTTGCCTACCA 2654920
Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739
||||| || || ||||| | ||| || || || || || | || | || ||||
Sbjct 2654921 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 2654980
Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799
|| || || || | || |||||||| || ||||||||||| || | |||||
Sbjct 2654981 AGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACT------CAGAA 2655034
Query 11800 CAC----TG--AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853
| | || || |||||| ||| | |||||||| |||||| || || || ||
Sbjct 2655035 CCCGAGATGGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAGCAGGGTT 2655094
Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCA 11913
|| || |||||||| | |||| | || || | || ||||||| ||||||| | ||
Sbjct 2655095 TTCCCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACTGCA 2655154
Query 11914 AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAG 11973
| | | |||||||||||| || || ||||| | ||| | |||| |||||| |
Sbjct 2655155 GTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATGAAATCCTGCTTGGCTTCG 2655214
Query 11974 TCGATACCCTCAACATC 11990
|||| || |||||||
Sbjct 2655215 TCGACTCCAGCAACATC 2655231
>seq415
Length=609146
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
|| || ||||| || |||||||| | || || || ||||||||||||||||||
Sbjct 100437 TGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCCAGGCATGAGTCCT 100496
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626
| |||||||||||| ||||| | |||||| ||||| || |||||||| || || |||||
Sbjct 100497 CGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCTTCAACACA 100555
>seq1180
Length=4302264
Score = 91.5 bits (100), Expect = 2e-13
Identities = 73/88 (83%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| ||| ||
Sbjct 912105 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGATCCCTGTA 912046
Query 136777 GGGAACAGCTTTTAGATATATTTTTTGT 136804
| || |||| |||||||||||||
Sbjct 912045 TAGGCCACTTTTTTTATATATTTTTTGT 912018
>seq1163
Length=414626
Score = 91.5 bits (100), Expect = 2e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGG 111051
||||| | || ||||| ||||||||||| |||| | |||||| |||||| | ||
Sbjct 27072 TGAGGCCTTGGAGTTCCTGCATTGAAGAGAATAGGAGATGCATGAGTGAACAATCTCTGA 27131
Query 111052 GACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCA 111111
|||||| | ||| || | || ||| || | ||||| |||||| |||| | |
Sbjct 27132 GACATCAAATGGTAAGTTTTGATTGCAGAATCAATATCTTCCATGTGAATGCCAACAGAA 27191
Query 111112 ACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAA 111171
|||| ||||| ||| | ||||||| |||| | | || |||| || | |||||
Sbjct 27192 ACTCTCATGAGCATGTGTTGAGGCCTTTCAACAACTTTCCCATGGACTTTCAAGAGGTAC 27251
Query 111172 CTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221
| |||| || || || | |||||||| || |||| |||||||| ||
Sbjct 27252 AACCTCTCAAGTGTTTTAAATCCAAAGTAATCATAATCAAAATCACGGTC 27301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588959516034200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |