Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq894 149 7e-31 seq1757 125 8e-24 seq945 114 2e-20 seq772 114 2e-20 seq1432 87.8 2e-12 seq1163 86.0 7e-12 seq778 84.2 3e-11 >seq894 Length=3336090 Score = 149 bits (164), Expect = 7e-31 Identities = 333/495 (67%), Gaps = 14/495 (3%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 2654744 CGGTCAAACCGTCCTGGCCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2654803 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| |||| || || ||| Sbjct 2654804 GCCACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 2654863 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | ||||||||| || |||| |||| | | |||| | || Sbjct 2654864 AGGGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCAGTTCCTCTTTGCCTACCA 2654920 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||| | ||| ||||| ||||| |||||| ||| ||| || Sbjct 2654921 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 2654980 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 |||||||| || ||| ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 2654981 AGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-A 2655039 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | |||||| ||| | |||||| ||||||||| || || || || || || Sbjct 2655040 GATGGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCC 2655099 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| | ||||| |||| || ||| ||| ||| | || | | Sbjct 2655100 AGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACTGCAGTGAA 2655159 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCC---AATTCATCTTTGGCGGCGTC 9664 |||||||| | ||| ||||| ||||| | ||||| || || | ||||| |||| Sbjct 2655160 CCTCTCAGGCTTCTTCAGAAACTCCAC---CACTTCCATGAAATCCTGCTTGGCTTCGTC 2655216 Query 9665 AATCCCCTCAACATC 9679 | || ||||||| Sbjct 2655217 GACTCCAGCAACATC 2655231 >seq1757 Length=376612 Score = 125 bits (138), Expect = 8e-24 Identities = 279/415 (67%), Gaps = 8/415 (2%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || || | | ||| || || || | || | || ||| || | | ||||| Sbjct 158882 ATCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAA 158823 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||||||| || | || || || | || ||||| | ||||||||| || Sbjct 158822 ACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCTCC--- 158766 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| || | | | |||| | || || ||||| || ||||| | |||||||| || Sbjct 158765 ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATGCA 158706 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || || || ||| | | || ||||| || || ||| ||| || ||||| || Sbjct 158705 AGGAGCGTTCTCCTTGGCTTTCTTGAAAAGATCACGGACTCTTGAGGCACCAACACCGAC 158646 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | || || | || ||| || ||| || |||||| | Sbjct 158645 AAACATCTCAACAAACTCAGAACCAGAG-ATGGAGAAGAAAGGCACACCAGCTTCACCAG 158587 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 |||||||| || | ||| || || || ||||| || ||| ||||| |||| Sbjct 158586 CAATGGCTTTTGCCAAAAGGGTTTTCCCAGTACCAGGGGGACCAATAAGGAGAACACCTT 158527 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 ||||||||||| ||| || | ||||||| |||| ||| ||||| ||||| Sbjct 158526 TCGGAATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCAC 158472 >seq945 Length=941802 Score = 114 bits (126), Expect = 2e-20 Identities = 196/280 (70%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| | || |||||||| ||||| | |||||||| || Sbjct 882099 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 882156 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | ||| | || || || ||||||||||||||||| |||||| Sbjct 882157 CCTCCCATCCCAGCTCCTCTCTGCCTCCCAACAGCGTCAATCTCATCAATGAATACAATA 882216 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || || ||| | || | || || | ||| | ||| || || |||||||| Sbjct 882217 CAAGG-TGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACACC 882275 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 |||||| | ||||||||| | || ||| | || || ||| || || | || || Sbjct 882276 AACAAAAAGCTCCACAAACTCTGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCCTCCCC 882335 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557 || | || | || || || |||||||||||||| ||| Sbjct 882336 AGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 882375 >seq772 Length=329654 Score = 114 bits (126), Expect = 2e-20 Identities = 196/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| |||||||| || ||||| || ||||| | |||||||| | Sbjct 253388 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 253331 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | ||| ||||| | | |||| | ||||| ||||||||||||||||| || |||||| Sbjct 253330 CCACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACAATA 253271 Query 9399 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 || || || |||| || | ||||| | ||| | ||| || || ||||| Sbjct 253270 CAAGGAGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCCAC 253215 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 ||||||||| | ||||||||| | | || | ||| | ||| || || | ||| Sbjct 253214 ACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCTGCTTC 253155 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || | |||| || | ||| ||||| |||||||| || Sbjct 253154 TCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 253113 >seq1432 Length=495105 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| ||||| || |||| ||||| | ||| || ||||| || || ||||| | ||| Sbjct 66059 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACC 66000 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 || ||||||||||| | || | || || || |||||||| ||||| || || || Sbjct 65999 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCA 65940 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 ||||| || | | | ||| |||||| |||| | || | |||||||||||| Sbjct 65939 AGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGA---TCCGTTGATCCATTTCATTGC 65883 Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||||| || |||||| | ||| || | |||| ||| || Sbjct 65882 CCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGC 65841 >seq1163 Length=414626 Score = 86.0 bits (94), Expect = 7e-12 Identities = 163/237 (69%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || || ||||||||||| | || | ||| ||| |||||| | || Sbjct 27072 TGAGGCCTTGGAGTTCCTGCATTGAAGAGAATAGGAGATGCATGAGTGAACAATCTCTGA 27131 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | ||| || | | |||||||||| |||||| ||| ||||| | | Sbjct 27132 GACATCAAATGGTAAGTTTTGATTGCAGAATCAATATCTTCCATGTGAATGCCAACAGAA 27191 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 107345 || | ||| | ||||| ||| || |||| | | | |||| || | || |||| | Sbjct 27192 ACTCTCATGAGCATGTGTTGAGGCCTTTCAACAACTTTCCCATGGA--CTTTCAAGAGGT 27249 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCGCTTCGTAT 107402 | | ||||||| ||||| | ||||||||| || ||||| | || || |||||| Sbjct 27250 ACAACCTCTCAAGTGTTTTAAATCCAAAGTAATCATAATCAAAATCACG-GTCGTAT 27305 >seq778 Length=452071 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 106271 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 106330 |||||| |||| || |||||||| ||||| | ||||||||||||||||||||| || || Sbjct 424440 ATAAATGCATCTGCAAGACCTTGTACACCGATACCAATAGGTCTGTGTCGCATGTTTGAA 424381 Query 106331 TTTCGCGCAGTCTCAACGGGATAAAAATT 106359 || |||||||| || ||||| |||| Sbjct 424380 GTTTTTGCAGTCTCCACAGGATAGTAATT 424352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589964287912360