Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq894 149 7e-31
seq1757 125 8e-24
seq945 114 2e-20
seq772 114 2e-20
seq1432 87.8 2e-12
seq1163 86.0 7e-12
seq778 84.2 3e-11
>seq894
Length=3336090
Score = 149 bits (164), Expect = 7e-31
Identities = 333/495 (67%), Gaps = 14/495 (3%)
Strand=Plus/Plus
Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251
|| ||||| || ||||| | || | ||| ||||| || || | | || || ||
Sbjct 2654744 CGGTCAAACCGTCCTGGCCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2654803
Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311
|| | || | || ||| || | | ||||||||||||||||| |||| || || |||
Sbjct 2654804 GCCACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 2654863
Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368
| || ||||| | ||||||||| || |||| |||| | | |||| | ||
Sbjct 2654864 AGGGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCAGTTCCTCTTTGCCTACCA 2654920
Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428
|| ||||| || ||||| | ||| ||||| ||||| |||||| ||| ||| ||
Sbjct 2654921 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 2654980
Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488
|||||||| || ||| ||| || ||||| ||||||||||| ||||| | | | | |
Sbjct 2654981 AGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-A 2655039
Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547
|| | | |||||| ||| | |||||| ||||||||| || || || || || ||
Sbjct 2655040 GATGGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCC 2655099
Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607
||||| || ||| | ||||| |||| || ||| ||| ||| | || | |
Sbjct 2655100 AGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACTGCAGTGAA 2655159
Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCC---AATTCATCTTTGGCGGCGTC 9664
|||||||| | ||| ||||| ||||| | ||||| || || | ||||| ||||
Sbjct 2655160 CCTCTCAGGCTTCTTCAGAAACTCCAC---CACTTCCATGAAATCCTGCTTGGCTTCGTC 2655216
Query 9665 AATCCCCTCAACATC 9679
| || |||||||
Sbjct 2655217 GACTCCAGCAACATC 2655231
>seq1757
Length=376612
Score = 125 bits (138), Expect = 8e-24
Identities = 279/415 (67%), Gaps = 8/415 (2%)
Strand=Plus/Minus
Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283
|||||| || || | | ||| || || || | || | || ||| || | | |||||
Sbjct 158882 ATCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAA 158823
Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343
|||||||||||| || | || || || | || ||||| | ||||||||| ||
Sbjct 158822 ACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCTCC--- 158766
Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400
|||| || | | | |||| | || || ||||| || ||||| | |||||||| ||
Sbjct 158765 ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATGCA 158706
Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460
|| || || ||| | | || ||||| || || ||| ||| || ||||| ||
Sbjct 158705 AGGAGCGTTCTCCTTGGCTTTCTTGAAAAGATCACGGACTCTTGAGGCACCAACACCGAC 158646
Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519
||||||||| ||||| | | | || || | || ||| || ||| || |||||| |
Sbjct 158645 AAACATCTCAACAAACTCAGAACCAGAG-ATGGAGAAGAAAGGCACACCAGCTTCACCAG 158587
Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579
|||||||| || | ||| || || || ||||| || ||| ||||| ||||
Sbjct 158586 CAATGGCTTTTGCCAAAAGGGTTTTCCCAGTACCAGGGGGACCAATAAGGAGAACACCTT 158527
Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634
||||||||||| ||| || | ||||||| |||| ||| ||||| |||||
Sbjct 158526 TCGGAATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCAC 158472
>seq945
Length=941802
Score = 114 bits (126), Expect = 2e-20
Identities = 196/280 (70%), Gaps = 6/280 (2%)
Strand=Plus/Plus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| ||||||||||| ||||| | || |||||||| ||||| | |||||||| ||
Sbjct 882099 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 882156
Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
| | ||| ||||| | | ||| | || || || ||||||||||||||||| ||||||
Sbjct 882157 CCTCCCATCCCAGCTCCTCTCTGCCTCCCAACAGCGTCAATCTCATCAATGAATACAATA 882216
Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457
|| || || ||| | || | || || | ||| | ||| || || ||||||||
Sbjct 882217 CAAGG-TGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACACC 882275
Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517
|||||| | ||||||||| | || ||| | || || ||| || || | || ||
Sbjct 882276 AACAAAAAGCTCCACAAACTCTGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCCTCCCC 882335
Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557
|| | || | || || || |||||||||||||| |||
Sbjct 882336 AGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 882375
>seq772
Length=329654
Score = 114 bits (126), Expect = 2e-20
Identities = 196/282 (70%), Gaps = 12/282 (4%)
Strand=Plus/Minus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| ||||||||||| |||||||| || ||||| || ||||| | |||||||| |
Sbjct 253388 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 253331
Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
| ||| ||||| | | |||| | ||||| ||||||||||||||||| || ||||||
Sbjct 253330 CCACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACAATA 253271
Query 9399 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454
|| || || |||| || | ||||| | ||| | ||| || || |||||
Sbjct 253270 CAAGGAGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCCAC 253215
Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514
||||||||| | ||||||||| | | || | ||| | ||| || || | |||
Sbjct 253214 ACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCTGCTTC 253155
Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
|| || | |||| || | ||| ||||| |||||||| ||
Sbjct 253154 TCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 253113
>seq1432
Length=495105
Score = 87.8 bits (96), Expect = 2e-12
Identities = 153/222 (69%), Gaps = 3/222 (1%)
Strand=Plus/Minus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| ||||| || |||| ||||| | ||| || ||||| || || ||||| | |||
Sbjct 66059 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACC 66000
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|| ||||||||||| | || | || || || |||||||| ||||| || || ||
Sbjct 65999 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCA 65940
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464
||||| || | | | ||| |||||| |||| | || | ||||||||||||
Sbjct 65939 AGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGA---TCCGTTGATCCATTTCATTGC 65883
Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506
||||| || |||||| | ||| || | |||| ||| ||
Sbjct 65882 CCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGC 65841
>seq1163
Length=414626
Score = 86.0 bits (94), Expect = 7e-12
Identities = 163/237 (69%), Gaps = 5/237 (2%)
Strand=Plus/Plus
Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227
|| || ||||| || || ||||||||||| | || | ||| ||| |||||| | ||
Sbjct 27072 TGAGGCCTTGGAGTTCCTGCATTGAAGAGAATAGGAGATGCATGAGTGAACAATCTCTGA 27131
Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287
|||||| | ||| || | | |||||||||| |||||| ||| ||||| | |
Sbjct 27132 GACATCAAATGGTAAGTTTTGATTGCAGAATCAATATCTTCCATGTGAATGCCAACAGAA 27191
Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 107345
|| | ||| | ||||| ||| || |||| | | | |||| || | || |||| |
Sbjct 27192 ACTCTCATGAGCATGTGTTGAGGCCTTTCAACAACTTTCCCATGGA--CTTTCAAGAGGT 27249
Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCGCTTCGTAT 107402
| | ||||||| ||||| | ||||||||| || ||||| | || || ||||||
Sbjct 27250 ACAACCTCTCAAGTGTTTTAAATCCAAAGTAATCATAATCAAAATCACG-GTCGTAT 27305
>seq778
Length=452071
Score = 84.2 bits (92), Expect = 3e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 106271 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 106330
|||||| |||| || |||||||| ||||| | ||||||||||||||||||||| || ||
Sbjct 424440 ATAAATGCATCTGCAAGACCTTGTACACCGATACCAATAGGTCTGTGTCGCATGTTTGAA 424381
Query 106331 TTTCGCGCAGTCTCAACGGGATAAAAATT 106359
|| |||||||| || ||||| ||||
Sbjct 424380 GTTTTTGCAGTCTCCACAGGATAGTAATT 424352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589964287912360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |