Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq1127 136 5e-27 >seq1127 Length=645582 Score = 136 bits (150), Expect = 5e-27 Identities = 135/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966 |||| ||||| || || ||||| || | ||| ||||| || |||||||| ||| | | Sbjct 574029 TTCTTGACGCGGCCGAGGAAGCTGGAATCGATTTGCCATACTCTTGCCGTGCTGGTTCTT 573970 Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCC 172026 |||| ||||||||||||||| ||| | ||| | || |||||||| || ||| ||||| Sbjct 573969 GTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGATCAGTCTGACCAAAGTTTCC 573910 Query 172027 TTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||||| || || | | ||| || ||||| || |||| |||||||||||| Sbjct 573909 TTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTGTGCTGCTTATCCTAC 573855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610379716519560