Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1180 141 1e-28 seq2219 136 5e-27 >seq1180 Length=4302264 Score = 141 bits (156), Expect = 1e-28 Identities = 168/226 (74%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||| ||| ||| |||||||||||| |||| ||||| |||||||| |||||| Sbjct 2980928 GATATTGTTGTTGGTTCAGCTCAAAGGTTTGGTGTTCCCATGGGTTATGGAGGCCCTCAT 2980987 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG- 153865 ||||| ||||| || || || | |||||||||||| ||| ||||| || ||| | || Sbjct 2980988 GCTGCGTTCTTGGCTACTTCACAAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGT 2981047 Query 153866 -TCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 | ||| || ||| | ||| || |||| | | || | |||||||| |||| Sbjct 2981048 ATTAGT--GTTGATTCTTCAGGAAAGCAAGCTCTGCGTATGGCTATGCAGACTAGGGAGC 2981105 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCA 153970 ||||||| ||||| |||||||| || || |||||||| || ||||| Sbjct 2981106 AGCATATTAGGAGGGACAAAGCCACTAGCAACATCTGTACTGCTCA 2981151 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 |||||||| ||||||||| |||||||| |||||||||||||| |||||||| | Sbjct 2980448 GAGAATCCAGCTTGGTACACTCAATACACTCCTTATCAAGCTGAGATCTCTCAGGGTCGT 2980507 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | ||| | | |||||| ||| ||| | ||||| || || || || | || || | Sbjct 2980508 CTCGAATCGCTGCTCAATTTCCAGACGGTGATCACCGATCTCACGGGGCTTCCTATGTCG 2980567 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || || || | ||||||| || || || || || |||||| Sbjct 2980568 AATGCGTCCCTTCTGGATGAAGGGACCGCTGCTGCGGAGGCAATG 2980612 >seq2219 Length=261419 Score = 136 bits (150), Expect = 5e-27 Identities = 162/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || ||||||||| |||| ||||| ||||| |||||||||||||| ||||| || || || Sbjct 20474 CAGAGGTTTGGTGTTCCCATGGGTTATGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCA 20415 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885 | |||||||||||| ||| ||||| |||||| | | || ||| || ||| | | Sbjct 20414 CAAGAGTATAAGAGAATGATGCCTGGGAGAATTATTGGTGTTAGT--GTTGATTCTTCCG 20357 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || |||| | | | || | |||||||| || ||||||||| | || || |||| Sbjct 20356 GGAAGCAAGCTTTGCGTATGGCTATGCAGACTAGGGAACAGCATATCCGTAGGGATAAAG 20297 Query 153946 CAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCT 153983 | ||||| |||||||| || ||||||| | | ||||| Sbjct 20296 CTACCAGCAACATCTGTACCGCTCAGGTAATAATGGCT 20259 Score = 111 bits (122), Expect = 2e-19 Identities = 135/183 (74%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 153251 GCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGAT 153310 ||| || || | ||||||||| |||||| || || ||||| |||||||||||||| Sbjct 20988 GCGTAATATTATGGAGAATCCTGCTTGGTATACTCAATATACTCCTTATCAAGCTGAGAT 20929 Query 153311 ATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGG 153370 ||||| ||||| | ||| |||| |||||||||| ||| | || || || ||||| || Sbjct 20928 TTCTCAAGGAAGGCTTGAATCTTTGCTCAATTACCAGACGGTTATTACTGATCTTACCGG 20869 Query 153371 ATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GC 153429 ||||| || | ||||| || | | ||||||| || || || || ||||| || || Sbjct 20868 TTTACCGATGTCGAACGCTTCGTTGCTCGATGAAGGTACGGCGGCTGCGGAAGCGATGGC 20809 Query 153430 TAT 153432 ||| Sbjct 20808 TAT 20806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579196589281760