Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq1180 141 1e-28
seq2219 136 5e-27
>seq1180
Length=4302264
Score = 141 bits (156), Expect = 1e-28
Identities = 168/226 (74%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806
||||||| ||| ||| |||||||||||| |||| ||||| |||||||| ||||||
Sbjct 2980928 GATATTGTTGTTGGTTCAGCTCAAAGGTTTGGTGTTCCCATGGGTTATGGAGGCCCTCAT 2980987
Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG- 153865
||||| ||||| || || || | |||||||||||| ||| ||||| || ||| | ||
Sbjct 2980988 GCTGCGTTCTTGGCTACTTCACAAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGT 2981047
Query 153866 -TCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924
| ||| || ||| | ||| || |||| | | || | |||||||| ||||
Sbjct 2981048 ATTAGT--GTTGATTCTTCAGGAAAGCAAGCTCTGCGTATGGCTATGCAGACTAGGGAGC 2981105
Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCA 153970
||||||| ||||| |||||||| || || |||||||| || |||||
Sbjct 2981106 AGCATATTAGGAGGGACAAAGCCACTAGCAACATCTGTACTGCTCA 2981151
Score = 86.0 bits (94), Expect = 7e-12
Identities = 118/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323
|||||||| ||||||||| |||||||| |||||||||||||| |||||||| |
Sbjct 2980448 GAGAATCCAGCTTGGTACACTCAATACACTCCTTATCAAGCTGAGATCTCTCAGGGTCGT 2980507
Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383
| ||| | | |||||| ||| ||| | ||||| || || || || | || || |
Sbjct 2980508 CTCGAATCGCTGCTCAATTTCCAGACGGTGATCACCGATCTCACGGGGCTTCCTATGTCG 2980567
Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428
|| || || || | ||||||| || || || || || ||||||
Sbjct 2980568 AATGCGTCCCTTCTGGATGAAGGGACCGCTGCTGCGGAGGCAATG 2980612
>seq2219
Length=261419
Score = 136 bits (150), Expect = 5e-27
Identities = 162/218 (74%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827
|| ||||||||| |||| ||||| ||||| |||||||||||||| ||||| || || ||
Sbjct 20474 CAGAGGTTTGGTGTTCCCATGGGTTATGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCA 20415
Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885
| |||||||||||| ||| ||||| |||||| | | || ||| || ||| | |
Sbjct 20414 CAAGAGTATAAGAGAATGATGCCTGGGAGAATTATTGGTGTTAGT--GTTGATTCTTCCG 20357
Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945
| || |||| | | | || | |||||||| || ||||||||| | || || ||||
Sbjct 20356 GGAAGCAAGCTTTGCGTATGGCTATGCAGACTAGGGAACAGCATATCCGTAGGGATAAAG 20297
Query 153946 CAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCT 153983
| ||||| |||||||| || ||||||| | | |||||
Sbjct 20296 CTACCAGCAACATCTGTACCGCTCAGGTAATAATGGCT 20259
Score = 111 bits (122), Expect = 2e-19
Identities = 135/183 (74%), Gaps = 1/183 (1%)
Strand=Plus/Minus
Query 153251 GCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGAT 153310
||| || || | ||||||||| |||||| || || ||||| ||||||||||||||
Sbjct 20988 GCGTAATATTATGGAGAATCCTGCTTGGTATACTCAATATACTCCTTATCAAGCTGAGAT 20929
Query 153311 ATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGG 153370
||||| ||||| | ||| |||| |||||||||| ||| | || || || ||||| ||
Sbjct 20928 TTCTCAAGGAAGGCTTGAATCTTTGCTCAATTACCAGACGGTTATTACTGATCTTACCGG 20869
Query 153371 ATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GC 153429
||||| || | ||||| || | | ||||||| || || || || ||||| || ||
Sbjct 20868 TTTACCGATGTCGAACGCTTCGTTGCTCGATGAAGGTACGGCGGCTGCGGAAGCGATGGC 20809
Query 153430 TAT 153432
|||
Sbjct 20808 TAT 20806
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579196589281760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |