Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1180 125 8e-24 seq2219 118 1e-21 >seq1180 Length=4302264 Score = 125 bits (138), Expect = 8e-24 Identities = 153/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||||||| |||| ||||| || ||||| ||||||||||| ||||| || || || Sbjct 2980949 CAAAGGTTTGGTGTTCCCATGGGTTATGGAGGCCCTCATGCTGCGTTCTTGGCTACTTCA 2981008 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG--TCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| ||| ||||| || ||| | || | ||| || ||| || Sbjct 2981009 CAAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGTATTAGT--GTTGATTCTTCAG 2981066 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || |||| | | || | |||||||| ||||||||||| || || ||||||| Sbjct 2981067 GAAAGCAAGCTCTGCGTATGGCTATGCAGACTAGGGAGCAGCATATTAGGAGGGACAAAG 2981126 Query 158621 CAACCAGTAACATCTGCACAGCACAAG 158647 | || || |||||||| || || |||| Sbjct 2981127 CCACTAGCAACATCTGTACTGCTCAAG 2981153 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 |||||||| ||||||||| |||||||| |||||||||||||| |||||||| | Sbjct 2980448 GAGAATCCAGCTTGGTACACTCAATACACTCCTTATCAAGCTGAGATCTCTCAGGGTCGT 2980507 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | ||| | | |||||| ||| ||| | ||||| || ||||| || || || || | Sbjct 2980508 CTCGAATCGCTGCTCAATTTCCAGACGGTGATCACCGATCTCACGGGGCTTCCTATGTCG 2980567 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || || | ||||||| || || || || || |||||| Sbjct 2980568 AATGCGTCCCTTCTGGATGAAGGGACCGCTGCTGCGGAGGCAATG 2980612 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 2982902 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 2982961 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 |||||||| | ||||| |||||||| || ||| | |||||||| Sbjct 2982962 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAATCATTTGGCACCATTT 2983010 >seq2219 Length=261419 Score = 118 bits (130), Expect = 1e-21 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 || ||||||||| |||| ||||| || || |||||||||||||| ||||| || || || Sbjct 20474 CAGAGGTTTGGTGTTCCCATGGGTTATGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCA 20415 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| ||| ||||| |||||| | | || ||| || ||| | Sbjct 20414 CAAGAGTATAAGAGAATGATGCCTGGGAGAATTATTGGTGTTAGT--GTTGATTCTTCCG 20357 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || |||| | | | || | |||||||| || ||||||||| | || || |||| Sbjct 20356 GGAAGCAAGCTTTGCGTATGGCTATGCAGACTAGGGAACAGCATATCCGTAGGGATAAAG 20297 Query 158621 CAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCT 158658 | ||||| |||||||| || || || | | | ||||| Sbjct 20296 CTACCAGCAACATCTGTACCGCTCAGGTAATAATGGCT 20259 Score = 105 bits (116), Expect = 8e-18 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 157926 GCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGAT 157985 ||| || || | ||||||||| |||||| || || ||||| |||||||||||||| Sbjct 20988 GCGTAATATTATGGAGAATCCTGCTTGGTATACTCAATATACTCCTTATCAAGCTGAGAT 20929 Query 157986 ATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGG 158045 ||||| ||||| | ||| |||| |||||||||| ||| | || || || || || || Sbjct 20928 TTCTCAAGGAAGGCTTGAATCTTTGCTCAATTACCAGACGGTTATTACTGATCTTACCGG 20869 Query 158046 ACTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 ||||||| | ||||| || | | ||||||| || || || || ||||| ||| Sbjct 20868 TTTACCGATGTCGAACGCTTCGTTGCTCGATGAAGGTACGGCGGCTGCGGAAGCGATG 20811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588034741917040