Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq1180 125 8e-24
seq2219 118 1e-21
>seq1180
Length=4302264
Score = 125 bits (138), Expect = 8e-24
Identities = 153/207 (74%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502
|||||||||||| |||| ||||| || ||||| ||||||||||| ||||| || || ||
Sbjct 2980949 CAAAGGTTTGGTGTTCCCATGGGTTATGGAGGCCCTCATGCTGCGTTCTTGGCTACTTCA 2981008
Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG--TCAGTCAGTAGATAGCGAAG 158560
| |||||||||||| ||| ||||| || ||| | || | ||| || ||| ||
Sbjct 2981009 CAAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGTATTAGT--GTTGATTCTTCAG 2981066
Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620
| || |||| | | || | |||||||| ||||||||||| || || |||||||
Sbjct 2981067 GAAAGCAAGCTCTGCGTATGGCTATGCAGACTAGGGAGCAGCATATTAGGAGGGACAAAG 2981126
Query 158621 CAACCAGTAACATCTGCACAGCACAAG 158647
| || || |||||||| || || ||||
Sbjct 2981127 CCACTAGCAACATCTGTACTGCTCAAG 2981153
Score = 95.1 bits (104), Expect = 1e-14
Identities = 120/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998
|||||||| ||||||||| |||||||| |||||||||||||| |||||||| |
Sbjct 2980448 GAGAATCCAGCTTGGTACACTCAATACACTCCTTATCAAGCTGAGATCTCTCAGGGTCGT 2980507
Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058
| ||| | | |||||| ||| ||| | ||||| || ||||| || || || || |
Sbjct 2980508 CTCGAATCGCTGCTCAATTTCCAGACGGTGATCACCGATCTCACGGGGCTTCCTATGTCG 2980567
Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103
|| || || || | ||||||| || || || || || ||||||
Sbjct 2980568 AATGCGTCCCTTCTGGATGAAGGGACCGCTGCTGCGGAGGCAATG 2980612
Score = 89.7 bits (98), Expect = 6e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752
||| || ||||| || ||||| || | || ||||| ||||||||||| |||||||||||
Sbjct 2982902 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 2982961
Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801
|||||||| | ||||| |||||||| || ||| | ||||||||
Sbjct 2982962 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAATCATTTGGCACCATTT 2983010
>seq2219
Length=261419
Score = 118 bits (130), Expect = 1e-21
Identities = 158/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502
|| ||||||||| |||| ||||| || || |||||||||||||| ||||| || || ||
Sbjct 20474 CAGAGGTTTGGTGTTCCCATGGGTTATGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCA 20415
Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560
| |||||||||||| ||| ||||| |||||| | | || ||| || ||| |
Sbjct 20414 CAAGAGTATAAGAGAATGATGCCTGGGAGAATTATTGGTGTTAGT--GTTGATTCTTCCG 20357
Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620
| || |||| | | | || | |||||||| || ||||||||| | || || ||||
Sbjct 20356 GGAAGCAAGCTTTGCGTATGGCTATGCAGACTAGGGAACAGCATATCCGTAGGGATAAAG 20297
Query 158621 CAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCT 158658
| ||||| |||||||| || || || | | | |||||
Sbjct 20296 CTACCAGCAACATCTGTACCGCTCAGGTAATAATGGCT 20259
Score = 105 bits (116), Expect = 8e-18
Identities = 130/178 (73%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 157926 GCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGAT 157985
||| || || | ||||||||| |||||| || || ||||| ||||||||||||||
Sbjct 20988 GCGTAATATTATGGAGAATCCTGCTTGGTATACTCAATATACTCCTTATCAAGCTGAGAT 20929
Query 157986 ATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGG 158045
||||| ||||| | ||| |||| |||||||||| ||| | || || || || || ||
Sbjct 20928 TTCTCAAGGAAGGCTTGAATCTTTGCTCAATTACCAGACGGTTATTACTGATCTTACCGG 20869
Query 158046 ACTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103
||||||| | ||||| || | | ||||||| || || || || ||||| |||
Sbjct 20868 TTTACCGATGTCGAACGCTTCGTTGCTCGATGAAGGTACGGCGGCTGCGGAAGCGATG 20811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588034741917040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |