Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 199 4e-46
seq778 102 9e-17
seq1009 95.1 1e-14
seq1163 89.7 6e-13
>seq1432
Length=495105
Score = 199 bits (220), Expect = 4e-46
Identities = 582/882 (66%), Gaps = 22/882 (2%)
Strand=Plus/Minus
Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728
||| ||||| || ||||||| || ||||| || |||||||| || | | || || |
Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306
Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788
|||||| ||||||| ||||| | ||| ||| | || | || | | |
Sbjct 66305 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 66246
Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848
|| ||||| || ||||| | ||| || |||||| ||||| |||||| || | ||
Sbjct 66245 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCAA 66186
Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908
| ||| || || || || ||| ||| || || | || || || | | |||
Sbjct 66185 GGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAACAAT 66126
Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTA--TAGAAGATGTTTAAACATCAAACATGCA 18966
||| | | ||| ||| | || || | |||| | || | |||||||| ||
Sbjct 66125 CGATTTCAAACGTTCTACATCA--AGCTTAGTTCTAAGAAGACTATAGATCAAACAAGCG 66068
Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026
|||||||| || || || |||||||| |||||||| ||||| ||||| | ||||||
Sbjct 66067 AAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGC 66008
Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACC 19085
|| | |||| ||| || ||||||||||| ||| |||| | | ||||| |||||||||||
Sbjct 66007 ATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATATACC 65949
Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT---AGCATCATTATTATGAAT 19142
||| || |||||||| || | ||| || | | || || ||| | || ||
Sbjct 65948 TTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAG-ATCCGT----TG-AT 65895
Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202
|||||||| |||||| || || ||||| | ||||| || ||||| || || | |||
Sbjct 65894 CCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAA 65835
Query 19203 TAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262
|||| | ||| | | ||||| | || | || | | | ||| ||||| ||
Sbjct 65834 GAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTC 65775
Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322
||||||||||| || || || || || |||||||| || | ||||||| | |||
Sbjct 65774 AGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTG 65715
Query 19323 TACTTCACTACA-AAATC-TTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380
|| || ||| |||| | | || | ||| || ||| ||||| || || ||
Sbjct 65714 AACATC-GGACATGAATCGTGTTGA-GAGATTCTCGAGAACGATTCCGTCTGATGCGGCG 65657
Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATG---TATTCCAA 19437
|| || || | || ||||| || || || ||| || ||||| || | | |||
Sbjct 65656 AAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAG 65597
Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497
|| | | |||| ||| | ||| |||||||| | ||||| || || || || |||||
Sbjct 65596 TCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTC 65537
Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATA 19539
|| ||||| | ||| || | | ||||| || || || |||
Sbjct 65536 TTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATA 65495
>seq778
Length=452071
Score = 102 bits (112), Expect = 9e-17
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
|||||||| || | ||| | ||||||| || | || | | |||||| |||||||||
Sbjct 423150 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 423091
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| | ||||| || || ||| || |||||| | || | |||||| || |||
Sbjct 423090 TTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGAA 423031
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| ||||| || || ||| ||| | |||||| ||| || || || |||||
Sbjct 423030 ACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAATG 422971
Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580
|| || || ||||||||| |||| | |||||| || ||
Sbjct 422970 CCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 422930
Score = 91.5 bits (100), Expect = 2e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
|||||||| || || | || |||||||||||| | |||||| ||| || | ||| |
Sbjct 422802 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 422743
Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717
|| |||| || ||||||| || || | ||| || ||||| | || || | ||| |
Sbjct 422742 GTAAGTTTGGATTGCAGAATCAATGTCTTCCTTG-TGGATACCAACAGCAACCCTCATCA 422684
Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777
||| | |||||| |||||||||| | | | | |||||| || || ||| | || |
Sbjct 422683 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAA 422624
Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811
|||||||| ||||| || | |||| ||| ||
Sbjct 422623 GAGTTTTAAATCCAAAGTAATCGTATTCAAAATC 422590
>seq1009
Length=3105692
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
|||||||| || || | || |||||||||||| | |||||| || || | || |
Sbjct 1455172 GTTCCTGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATGG 1455113
Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718
|| |||| ||| | ||||| ||||| | ||| || || || | ||| || | ||| |
Sbjct 1455112 TAAGTTTTGATAGCGGAATCGATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCAG 1455054
Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778
||| | |||||| |||||||| | |||| | | ||| || || |||||| | || |
Sbjct 1455053 CATGTGTTGAGGCCTTTCAACCACTTTGCCTTGCACTTTTAAGAGGTATGATCTCTCAAG 1454994
Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827
|||||||| ||||| || | ||| ||| ||| ||||| || |||
Sbjct 1454993 CGTTTTAAATCCAAAGTAATCATATTCAAAATCGCGATCATAGATGATT 1454945
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
|||||||| || | ||| | ||||||| || | || | | |||||| |||||||||
Sbjct 1455502 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACCA 1455443
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| |||||||| || ||| || |||||| | || | || || || ||||
Sbjct 1455442 TTAGATGCTCCATTGGTACCACGAATGTAGCTTCCAGTTGCACGGATGTTGTGAACTGAA 1455383
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| || || || ||| ||| ||| | ||||||| ||| | || ||||| ||
Sbjct 1455382 ACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATATC 1455323
Query 48540 CCTTCTATACTATCATCTATCAT 48562
|| || || |||||||| ||||
Sbjct 1455322 CCCTCGATGCTATCATCCTTCAT 1455300
>seq1163
Length=414626
Score = 89.7 bits (98), Expect = 6e-13
Identities = 141/200 (71%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
|||||||| ||| || | | |||||||||||| | ||| || ||| || | ||| |
Sbjct 27083 AGTTCCTGCATTGAAGAGAATAGGAGATGCATGAGTGAACAATCTCTGAGACATCAAATG 27142
Query 48659 ATATGTTTCAATAACAGAATCTATATC--CCATTGATGTATACCTATAGATACACGCATT 48716
|| |||| || ||||||| ||||| |||| || || || | ||| || | |||
Sbjct 27143 GTAAGTTTTGATTGCAGAATCAATATCTTCCAT--GTGAATGCCAACAGAAACTCTCATG 27200
Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776
| ||| | |||||| |||||||||| ||| || | |||||| || || | | ||
Sbjct 27201 AGCATGTGTTGAGGCCTTTCAACAACTTTCCCATGGACTTTCAAGAGGTACAACCTCTCA 27260
Query 48777 AATGTTTTAAAACCAAAATA 48796
| ||||||||| ||||| ||
Sbjct 27261 AGTGTTTTAAATCCAAAGTA 27280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562093067979960
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