Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1432 199 4e-46 seq778 102 9e-17 seq1009 95.1 1e-14 seq1163 89.7 6e-13 >seq1432 Length=495105 Score = 199 bits (220), Expect = 4e-46 Identities = 582/882 (66%), Gaps = 22/882 (2%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| || ||||| || |||||||| || | | || || | Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| ||||||| ||||| | ||| ||| | || | || | | | Sbjct 66305 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 66246 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || ||||| || ||||| | ||| || |||||| ||||| |||||| || | || Sbjct 66245 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCAA 66186 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||| || || || || ||| ||| || || | || || || | | ||| Sbjct 66185 GGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAACAAT 66126 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTA--TAGAAGATGTTTAAACATCAAACATGCA 18966 ||| | | ||| ||| | || || | |||| | || | |||||||| || Sbjct 66125 CGATTTCAAACGTTCTACATCA--AGCTTAGTTCTAAGAAGACTATAGATCAAACAAGCG 66068 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 |||||||| || || || |||||||| |||||||| ||||| ||||| | |||||| Sbjct 66067 AAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGC 66008 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACC 19085 || | |||| ||| || ||||||||||| ||| |||| | | ||||| ||||||||||| Sbjct 66007 ATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATATACC 65949 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT---AGCATCATTATTATGAAT 19142 ||| || |||||||| || | ||| || | | || || ||| | || || Sbjct 65948 TTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAG-ATCCGT----TG-AT 65895 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 |||||||| |||||| || || ||||| | ||||| || ||||| || || | ||| Sbjct 65894 CCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAA 65835 Query 19203 TAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 |||| | ||| | | ||||| | || | || | | | ||| ||||| || Sbjct 65834 GAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTC 65775 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322 ||||||||||| || || || || || |||||||| || | ||||||| | ||| Sbjct 65774 AGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTG 65715 Query 19323 TACTTCACTACA-AAATC-TTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 || || ||| |||| | | || | ||| || ||| ||||| || || || Sbjct 65714 AACATC-GGACATGAATCGTGTTGA-GAGATTCTCGAGAACGATTCCGTCTGATGCGGCG 65657 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATG---TATTCCAA 19437 || || || | || ||||| || || || ||| || ||||| || | | ||| Sbjct 65656 AAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAG 65597 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 || | | |||| ||| | ||| |||||||| | ||||| || || || || ||||| Sbjct 65596 TCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTC 65537 Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATA 19539 || ||||| | ||| || | | ||||| || || || ||| Sbjct 65536 TTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATA 65495 >seq778 Length=452071 Score = 102 bits (112), Expect = 9e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||||| || | || | | |||||| ||||||||| Sbjct 423150 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 423091 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| || |||||| | || | |||||| || ||| Sbjct 423090 TTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGAA 423031 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| ||| | |||||| ||| || || || ||||| Sbjct 423030 ACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAATG 422971 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 || || || ||||||||| |||| | |||||| || || Sbjct 422970 CCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 422930 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||| || || | || |||||||||||| | |||||| ||| || | ||| | Sbjct 422802 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 422743 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 || |||| || ||||||| || || | ||| || ||||| | || || | ||| | Sbjct 422742 GTAAGTTTGGATTGCAGAATCAATGTCTTCCTTG-TGGATACCAACAGCAACCCTCATCA 422684 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | |||||| |||||||||| | | | | |||||| || || ||| | || | Sbjct 422683 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAA 422624 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 |||||||| ||||| || | |||| ||| || Sbjct 422623 GAGTTTTAAATCCAAAGTAATCGTATTCAAAATC 422590 >seq1009 Length=3105692 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 |||||||| || || | || |||||||||||| | |||||| || || | || | Sbjct 1455172 GTTCCTGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATGG 1455113 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || |||| ||| | ||||| ||||| | ||| || || || | ||| || | ||| | Sbjct 1455112 TAAGTTTTGATAGCGGAATCGATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCAG 1455054 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||| | |||| | | ||| || || |||||| | || | Sbjct 1455053 CATGTGTTGAGGCCTTTCAACCACTTTGCCTTGCACTTTTAAGAGGTATGATCTCTCAAG 1454994 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 |||||||| ||||| || | ||| ||| ||| ||||| || ||| Sbjct 1454993 CGTTTTAAATCCAAAGTAATCATATTCAAAATCGCGATCATAGATGATT 1454945 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||||| || | || | | |||||| ||||||||| Sbjct 1455502 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACCA 1455443 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| |||||||| || ||| || |||||| | || | || || || |||| Sbjct 1455442 TTAGATGCTCCATTGGTACCACGAATGTAGCTTCCAGTTGCACGGATGTTGTGAACTGAA 1455383 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || ||| ||| ||| | ||||||| ||| | || ||||| || Sbjct 1455382 ACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATATC 1455323 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || |||||||| |||| Sbjct 1455322 CCCTCGATGCTATCATCCTTCAT 1455300 >seq1163 Length=414626 Score = 89.7 bits (98), Expect = 6e-13 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||| ||| || | | |||||||||||| | ||| || ||| || | ||| | Sbjct 27083 AGTTCCTGCATTGAAGAGAATAGGAGATGCATGAGTGAACAATCTCTGAGACATCAAATG 27142 Query 48659 ATATGTTTCAATAACAGAATCTATATC--CCATTGATGTATACCTATAGATACACGCATT 48716 || |||| || ||||||| ||||| |||| || || || | ||| || | ||| Sbjct 27143 GTAAGTTTTGATTGCAGAATCAATATCTTCCAT--GTGAATGCCAACAGAAACTCTCATG 27200 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 | ||| | |||||| |||||||||| ||| || | |||||| || || | | || Sbjct 27201 AGCATGTGTTGAGGCCTTTCAACAACTTTCCCATGGACTTTCAAGAGGTACAACCTCTCA 27260 Query 48777 AATGTTTTAAAACCAAAATA 48796 | ||||||||| ||||| || Sbjct 27261 AGTGTTTTAAATCCAAAGTA 27280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562093067979960