Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1432 156 5e-33 seq415 84.2 3e-11 >seq1432 Length=495105 Score = 156 bits (172), Expect = 5e-33 Identities = 355/529 (67%), Gaps = 10/529 (2%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| || |||||||| || | |||||| ||||| |||||||| ||||| || || Sbjct 66076 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTG 66017 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291 | ||| ||||||||||||| ||| || | ||| ||||| | |||||| | ||||| || Sbjct 66016 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAA 65958 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351 ||| ||||||||||| ||||| ||||| | | | |||| || | ||| Sbjct 65957 GAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTT----TGAGATC 65902 Query 37352 AG-AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 | |||||||| ||| ||| ||||| || | ||||| ||||||||| |||| Sbjct 65901 CGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTG 65842 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470 | |||||| | | | |||| | ||| | || ||||| || | || | ||||| Sbjct 65841 CGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTAT 65782 Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 |||| ||||| |||||||| || || || || || || || || || | |||||| | Sbjct 65781 ACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTG 65722 Query 37531 ATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590 | | ||||||||| | || | | | | || || ||| || || || | Sbjct 65721 AGACCTGAACATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATG 65662 Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATA---ATTTTT 37647 | || ||||| || || || | ||| || || || | ||| || || | || | |||| Sbjct 65661 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTT 65602 Query 37648 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 ||| || | | |||| || | ||| ||||| || ||||||| || Sbjct 65601 CCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAA 65553 >seq415 Length=609146 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| || ||||| || |||| ||||| |||| | |||||||| || ||||| |||| Sbjct 100421 ACAAGCGAAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAG 100480 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAAGA 37293 ||| ||||| | |||| ||| || | ||| || |||| |||||| | || || |||| Sbjct 100481 TCCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTTCCGGAGAAGA 100539 Query 37294 AAATACCTTCAAC 37306 | ||||||||||| Sbjct 100540 AGATACCTTCAAC 100552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592300222533560