Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_019401.1
Length=358663
Score E
Sequences producing significant alignments: (Bits) Value
seq1336 104 5e-17
>seq1336
Length=3719316
Score = 104 bits (114), Expect = 5e-17
Identities = 179/255 (70%), Gaps = 4/255 (2%)
Strand=Plus/Minus
Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365
|| ||| || |||||||| |||||||||| || || || || || | || ||
Sbjct 183541 AGCAGGGAAGCTTGATCCTGTAATTGGTCGGGACGAGGAGATTAGAAGAGTTG-TTAGGA 183483
Query 150366 TTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAA 150425
||||||| | | ||| || || ||| || | | |||| || ||||| ||||||||||
Sbjct 183482 TTCTTTCGAGGAGAACAAAGAACAATCCTGTGCTTATTGGAGAGCCAGGAGTTGGTAAAA 183423
Query 150426 CACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGA 150485
|| | ||||| || ||||| ||| | || | || || ||||| || | | | |
Sbjct 183422 CAGCTGTGGTTGAAGGCTTAGCGCAAAGGATTGTGAAAGGAGATGTGCCCAACAGTCTTA 183363
Query 150486 AAGATGTTGAAATTC-TTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGT 150544
||||| || ||| |||||||| | ||||||||||| ||||||| ||||||| ||
Sbjct 183362 CTGATGT-GAGATTGATTTCTTTGGACATGGGTGCATTAGTTGCTGGTGCTAAGTACCGA 183304
Query 150545 GGTGAATTCGAAGAA 150559
|| || || ||||||
Sbjct 183303 GGAGAGTTTGAAGAA 183289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1147557478859022
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |