Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1336 104 5e-17 >seq1336 Length=3719316 Score = 104 bits (114), Expect = 5e-17 Identities = 179/255 (70%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365 || ||| || |||||||| |||||||||| || || || || || | || || Sbjct 183541 AGCAGGGAAGCTTGATCCTGTAATTGGTCGGGACGAGGAGATTAGAAGAGTTG-TTAGGA 183483 Query 150366 TTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAA 150425 ||||||| | | ||| || || ||| || | | |||| || ||||| |||||||||| Sbjct 183482 TTCTTTCGAGGAGAACAAAGAACAATCCTGTGCTTATTGGAGAGCCAGGAGTTGGTAAAA 183423 Query 150426 CACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGA 150485 || | ||||| || ||||| ||| | || | || || ||||| || | | | | Sbjct 183422 CAGCTGTGGTTGAAGGCTTAGCGCAAAGGATTGTGAAAGGAGATGTGCCCAACAGTCTTA 183363 Query 150486 AAGATGTTGAAATTC-TTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGT 150544 ||||| || ||| |||||||| | ||||||||||| ||||||| ||||||| || Sbjct 183362 CTGATGT-GAGATTGATTTCTTTGGACATGGGTGCATTAGTTGCTGGTGCTAAGTACCGA 183304 Query 150545 GGTGAATTCGAAGAA 150559 || || || |||||| Sbjct 183303 GGAGAGTTTGAAGAA 183289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147557478859022