Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_019444.1
Length=176043
Score E
Sequences producing significant alignments: (Bits) Value
seq1127 127 2e-24
seq1027 96.9 4e-15
>seq1127
Length=645582
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 164046 AGTGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATT 164105
||||||| || || ||| |||| ||||| || || ||||| ||| | ||| | |
Sbjct 574050 AGTGTGACGACGACGTTTACGTTCTTGACGCGGCCGAGGAAGCTGGAATCGATTTGCCAT 573991
Query 164106 ACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTG 164165
||||||| ||||||||| |||| || ||||| |||||| |||| |||||| ||||||
Sbjct 573990 ACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTG 573931
Query 164166 ATCAGAGTGATCAGTCATTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGT 164225
||||| ||| || ||||| || ||||| ||||||| | ||| || || || || |
Sbjct 573930 ATCAGTCTGACCAAAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTT 573871
Query 164226 GTGTAGCATATCCAACATCTGAT 164248
||| || ||||| || ||||||
Sbjct 573870 GTGCTGCTTATCCTACTTCTGAT 573848
>seq1027
Length=9901
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 164021 ACTCCTGAGGGAGAAACAGTTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 164080
|| |||||||||||| || || |||||||||| ||| ||| | || ||||| ||
Sbjct 6535 ACACCTGAGGGAGAACAAGAAGTGGAGTGTGAAGAAGATGTCTACGTCCTCGACGCTGCT 6594
Query 164081 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCA 164140
|| ||||| ||| | || | ||||| || ||||| ||| ||||||| || ||
Sbjct 6595 GAGGAAGCCGGAATCGACTTGCCGTACTCATGCCGTGCCGGTTCTTGCTCAAGTTGCGCC 6654
Query 164141 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGATCAG 164200
|| ||| | || ||||| | |||| ||| || ||| ||| |||||||||| |||
Sbjct 6655 GGGAAAGTCGTCTCTGGCTCCATTGACCAGTCGGAACAGAGCTTCTTAGACGATGACCAG 6714
Query 164201 ATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACATCTGAT 164248
|| | ||| | || | || ||||| || ||||| || ||||||
Sbjct 6715 ATGAGCGAAGGCTATGTCTTGACCTGTGTGGCTTATCCGACTTCTGAT 6762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563193837171320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |