Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq1127 127 2e-24 seq1027 96.9 4e-15 >seq1127 Length=645582 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 164046 AGTGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATT 164105 ||||||| || || ||| |||| ||||| || || ||||| ||| | ||| | | Sbjct 574050 AGTGTGACGACGACGTTTACGTTCTTGACGCGGCCGAGGAAGCTGGAATCGATTTGCCAT 573991 Query 164106 ACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTG 164165 ||||||| ||||||||| |||| || ||||| |||||| |||| |||||| |||||| Sbjct 573990 ACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTG 573931 Query 164166 ATCAGAGTGATCAGTCATTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGT 164225 ||||| ||| || ||||| || ||||| ||||||| | ||| || || || || | Sbjct 573930 ATCAGTCTGACCAAAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTT 573871 Query 164226 GTGTAGCATATCCAACATCTGAT 164248 ||| || ||||| || |||||| Sbjct 573870 GTGCTGCTTATCCTACTTCTGAT 573848 >seq1027 Length=9901 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 164021 ACTCCTGAGGGAGAAACAGTTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 164080 || |||||||||||| || || |||||||||| ||| ||| | || ||||| || Sbjct 6535 ACACCTGAGGGAGAACAAGAAGTGGAGTGTGAAGAAGATGTCTACGTCCTCGACGCTGCT 6594 Query 164081 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCA 164140 || ||||| ||| | || | ||||| || ||||| ||| ||||||| || || Sbjct 6595 GAGGAAGCCGGAATCGACTTGCCGTACTCATGCCGTGCCGGTTCTTGCTCAAGTTGCGCC 6654 Query 164141 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGATCAG 164200 || ||| | || ||||| | |||| ||| || ||| ||| |||||||||| ||| Sbjct 6655 GGGAAAGTCGTCTCTGGCTCCATTGACCAGTCGGAACAGAGCTTCTTAGACGATGACCAG 6714 Query 164201 ATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACATCTGAT 164248 || | ||| | || | || ||||| || ||||| || |||||| Sbjct 6715 ATGAGCGAAGGCTATGTCTTGACCTGTGTGGCTTATCCGACTTCTGAT 6762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563193837171320