Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 125 1e-23
seq415 91.5 3e-13
>seq1432
Length=495105
Score = 125 bits (138), Expect = 1e-23
Identities = 188/264 (71%), Gaps = 5/264 (2%)
Strand=Plus/Minus
Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484
||||||||||| || | |||||| || ||||| ||||| ||||||||||| | || ||
Sbjct 65782 TACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCT 65723
Query 48485 AACACCTGCACTTCTGTGGAGAATC-TCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543
| ||||| || || | ||||| | | || |||||||| || || || |||||
Sbjct 65722 GAGACCTGAACATCGGACATGAATCGTGTTGAG-AGATTCTCGAGAACGATTCCGTCTGA 65664
Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603
|| || |||||||| ||||| ||||| | ||| || || |||| || ||| || | ||
Sbjct 65663 TGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTT 65604
Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660
|||| | | ||||| || || |||||||| | ||||||||||||||
Sbjct 65603 TTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTC 65544
Query 48661 TGCTTTTTTGTACATGCCCCATAT 48684
||||| |||||||| |||| ||
Sbjct 65543 GGCTTTCTTGTACATCTCCCAGAT 65520
>seq415
Length=609146
Score = 91.5 bits (100), Expect = 3e-13
Identities = 187/275 (68%), Gaps = 5/275 (2%)
Strand=Plus/Plus
Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484
|||||||| || || | || || || ||||||||||| |||||||| || | |||||
Sbjct 100881 TACATCTCCGAATGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCC 100940
Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGA 48543
| || || || || | ||||| ||| |||||||| || || || || ||
Sbjct 100941 GAGACTTGAACATCGGACATGAATC-GAGAAGCGAGATTCTCTAATACGATTCCGTCGGA 100999
Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603
|| || ||||| || ||||||||||| | ||| || || || || | ||||| ||
Sbjct 101000 TGCGGCGAAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTT 101059
Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660
|||| | | ||||| || || |||||||| | |||||||| || ||
Sbjct 101060 TTCCCAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTC 101119
Query 48661 TGCTTTTTTGTACATGCCCCATATGTCCGGATAGT 48695
|||||||||||||| |||| || | || ||||
Sbjct 101120 GGCTTTTTTGTACATTTCCCAGATCTGTGGGTAGT 101154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931506728725760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |