Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1432 125 1e-23 seq415 91.5 3e-13 >seq1432 Length=495105 Score = 125 bits (138), Expect = 1e-23 Identities = 188/264 (71%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||||||||||| || | |||||| || ||||| ||||| ||||||||||| | || || Sbjct 65782 TACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCT 65723 Query 48485 AACACCTGCACTTCTGTGGAGAATC-TCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | ||||| || || | ||||| | | || |||||||| || || || ||||| Sbjct 65722 GAGACCTGAACATCGGACATGAATCGTGTTGAG-AGATTCTCGAGAACGATTCCGTCTGA 65664 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || || |||||||| ||||| ||||| | ||| || || |||| || ||| || | || Sbjct 65663 TGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTT 65604 Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 |||| | | ||||| || || |||||||| | |||||||||||||| Sbjct 65603 TTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTC 65544 Query 48661 TGCTTTTTTGTACATGCCCCATAT 48684 ||||| |||||||| |||| || Sbjct 65543 GGCTTTCTTGTACATCTCCCAGAT 65520 >seq415 Length=609146 Score = 91.5 bits (100), Expect = 3e-13 Identities = 187/275 (68%), Gaps = 5/275 (2%) Strand=Plus/Plus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 |||||||| || || | || || || ||||||||||| |||||||| || | ||||| Sbjct 100881 TACATCTCCGAATGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCC 100940 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGA 48543 | || || || || | ||||| ||| |||||||| || || || || || Sbjct 100941 GAGACTTGAACATCGGACATGAATC-GAGAAGCGAGATTCTCTAATACGATTCCGTCGGA 100999 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || || ||||| || ||||||||||| | ||| || || || || | ||||| || Sbjct 101000 TGCGGCGAAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTT 101059 Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 |||| | | ||||| || || |||||||| | |||||||| || || Sbjct 101060 TTCCCAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTC 101119 Query 48661 TGCTTTTTTGTACATGCCCCATATGTCCGGATAGT 48695 |||||||||||||| |||| || | || |||| Sbjct 101120 GGCTTTTTTGTACATTTCCCAGATCTGTGGGTAGT 101154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931506728725760