Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq507 91.5 1e-13
seq687 89.7 4e-13
seq1780 87.8 2e-12
seq530 86.0 5e-12
>seq507
Length=413332
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||| || || |||||| | || || || |||||||| ||| || ||
Sbjct 378291 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 378350
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | || | ||| ||| ||| ||||| || || | || || ||
Sbjct 378351 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 378410
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|| |||||||||||||| || ||||| | || ||| | ||| |||||||||| |||
Sbjct 378411 CAAAGACTTATCTTTGCTGGGAAACAGCTTGAGGATGGTCGTACTTTGGCCGATTACAAC 378470
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
|| || |||||||| ||||| ||| |||| | | ||| |||| || ||
Sbjct 378471 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTTCGTTTAAGAGGTGGTAT 378520
>seq687
Length=897029
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| |||||||| ||||| | || |||||||||||||| ||| || |||
Sbjct 268526 ATGCAGATATTTGTGAAAACTCTTACCGGTAAAACCATTACTCTAGAAGTTGAGAGCTCA 268585
Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| || | | | || | || || || | || |||||||| ||| | || || ||
Sbjct 268586 GACACCATTGACAATGTGAAAGCTAAGATTCAA-GACAAAGAAGGAATCCCTCCGGACCA 268644
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
||||||||||||||| || ||||| ||| | || ||| | ||| | || ||||| ||
Sbjct 268645 ACAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGCACTCTTGCGGATTACAA 268704
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTA 28763
||| ||||| || || || || ||| | |||
Sbjct 268705 CATCCAAAAGGAGTCAACACTTCACCTTGTA 268735
>seq1780
Length=424430
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| ||||| || || || | || ||||||||||||||| ||| || ||||
Sbjct 97684 ATGCAGATATTCGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 97625
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | | | || || ||| ||||| || ||| | || ||||||
Sbjct 97624 GACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 97565
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|||||||| ||||| || || ||||| | || ||| | ||| | || ||||| |||
Sbjct 97564 CAGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAACGCTTGCAGATTACAAC 97505
Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756
|| ||||||||||| ||||| ||
Sbjct 97504 ATCCAAAAAGAATCAACTCTCCA 97482
>seq530
Length=553347
Score = 86.0 bits (94), Expect = 5e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || ||||| || ||||| || || || |||||||| ||| ||| ||
Sbjct 260214 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATTACTTTGGAAGTGGAGAGCTCT 260273
Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| || | | | || |||| || || | || ||||||||||| | || || ||
Sbjct 260274 GACACCATCGACAATGTCAAAGCCAAGATTCAA-GACAAAGAGGGTATTCCTCCGGACCA 260332
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
||||| | ||||| || || || ||| | |||||| | |||| |||| ||||| ||
Sbjct 260333 GCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTTTGGCTGATTACAA 260392
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
|||||| || || || ||||| ||| |||| || | | || ||||| ||
Sbjct 260393 CATTCAGAAGGAGTCCACTCTTCACTTGGTCTTGCGTCTCCGTGGAGGTAT 260443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425393191633581
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |