Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq507 91.5 1e-13 seq687 89.7 4e-13 seq1780 87.8 2e-12 seq530 86.0 5e-12 >seq507 Length=413332 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||| | || || || |||||||| ||| || || Sbjct 378291 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 378350 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||| ||| ||||| || || | || || || Sbjct 378351 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 378410 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||||||||| || ||||| | || ||| | ||| |||||||||| ||| Sbjct 378411 CAAAGACTTATCTTTGCTGGGAAACAGCTTGAGGATGGTCGTACTTTGGCCGATTACAAC 378470 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||| ||||| ||| |||| | | ||| |||| || || Sbjct 378471 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTTCGTTTAAGAGGTGGTAT 378520 >seq687 Length=897029 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| ||||| | || |||||||||||||| ||| || ||| Sbjct 268526 ATGCAGATATTTGTGAAAACTCTTACCGGTAAAACCATTACTCTAGAAGTTGAGAGCTCA 268585 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || || | || |||||||| ||| | || || || Sbjct 268586 GACACCATTGACAATGTGAAAGCTAAGATTCAA-GACAAAGAAGGAATCCCTCCGGACCA 268644 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||||||||||| || ||||| ||| | || ||| | ||| | || ||||| || Sbjct 268645 ACAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGCACTCTTGCGGATTACAA 268704 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTA 28763 ||| ||||| || || || || ||| | ||| Sbjct 268705 CATCCAAAAGGAGTCAACACTTCACCTTGTA 268735 >seq1780 Length=424430 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || || || | || ||||||||||||||| ||| || |||| Sbjct 97684 ATGCAGATATTCGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 97625 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | || || ||| ||||| || ||| | || |||||| Sbjct 97624 GACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 97565 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| ||||| || || ||||| | || ||| | ||| | || ||||| ||| Sbjct 97564 CAGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAACGCTTGCAGATTACAAC 97505 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||||||||| ||||| || Sbjct 97504 ATCCAAAAAGAATCAACTCTCCA 97482 >seq530 Length=553347 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || ||||| || || || |||||||| ||| ||| || Sbjct 260214 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATTACTTTGGAAGTGGAGAGCTCT 260273 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || |||| || || | || ||||||||||| | || || || Sbjct 260274 GACACCATCGACAATGTCAAAGCCAAGATTCAA-GACAAAGAGGGTATTCCTCCGGACCA 260332 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| | ||||| || || || ||| | |||||| | |||| |||| ||||| || Sbjct 260333 GCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTTTGGCTGATTACAA 260392 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| || || || ||||| ||| |||| || | | || ||||| || Sbjct 260393 CATTCAGAAGGAGTCCACTCTTCACTTGGTCTTGCGTCTCCGTGGAGGTAT 260443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425393191633581