Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1027 89.7 6e-13 >seq1027 Length=9901 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||||||||| || ||| |||| ||||| ||||||||||| || |||| | || Sbjct 6561 GTGTGAAGAAGATGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCGTA 6620 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || |||| || || || || ||| ||||||||||| || | || Sbjct 6621 CTCATGCCGTGCCGGTTCTTGCTCAAGTTGCGCCGGGAAAGTCGTCTCTGGCTCCATTGA 6680 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAAT---CGATTCTGGTTTCATTCTGAC 158501 ||| || ||| |||| | ||||||||||| || ||| || | | |||| Sbjct 6681 CCAGTCGGAACAGAGCTTCTTAGACGATGACCAGATGAGCGA---AGGCTATGTCTTGAC 6737 Query 158502 TTGTGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGA 158552 ||||| ||||||| || |||| || || || || |||| ||||| Sbjct 6738 CTGTGTGGCTTATCCGACTTCTGATGTCGTCATCGAAACCCACAAAGAAGA 6788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547731869925240