Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_020486.1
Length=171211
Score E
Sequences producing significant alignments: (Bits) Value
seq1027 89.7 6e-13
>seq1027
Length=9901
Score = 89.7 bits (98), Expect = 6e-13
Identities = 159/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384
||||||||| || ||| |||| ||||| ||||||||||| || |||| | ||
Sbjct 6561 GTGTGAAGAAGATGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCGTA 6620
Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444
||| |||||||| || |||| || || || || ||| ||||||||||| || | ||
Sbjct 6621 CTCATGCCGTGCCGGTTCTTGCTCAAGTTGCGCCGGGAAAGTCGTCTCTGGCTCCATTGA 6680
Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAAT---CGATTCTGGTTTCATTCTGAC 158501
||| || ||| |||| | ||||||||||| || ||| || | | ||||
Sbjct 6681 CCAGTCGGAACAGAGCTTCTTAGACGATGACCAGATGAGCGA---AGGCTATGTCTTGAC 6737
Query 158502 TTGTGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGA 158552
||||| ||||||| || |||| || || || || |||| |||||
Sbjct 6738 CTGTGTGGCTTATCCGACTTCTGATGTCGTCATCGAAACCCACAAAGAAGA 6788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547731869925240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |