Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq1257 98.7 1e-15 seq1127 95.1 2e-14 >seq1257 Length=180379 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 102824 GGGTATGCCACGCAGGTCAGAACAAAACC-TGCTTCTAGTTGATCGTCATCCAGAAAGGA 102882 ||||| ||||| || |||| ||| |||| | || | ||| | | || || ||||| || Sbjct 164778 GGGTAAGCCACACAAGTCAACACATAACCCTTCTCCAAGTGGCTA-TCCTCAAGAAACGA 164720 Query 102883 TTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACC 102942 |||| || || || | ||||| |||||| ||| || ||||| ||||||||||| Sbjct 164719 ACCATCTGACTGGTCAACGTTGCCCGACACAATCTGACCCGCGCAAGTGGAACACGCACC 164660 Query 102943 AGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTG 103002 ||| | || || ||||||| ||||| ||||| || ||||| || || | || ||||| Sbjct 164659 AGCTCTGCAAGAGTAAGGCAAGTCAACTCCTGCCTCTTCAGCTGCATCCAAGATGTATTG 164600 Query 103003 ATCATC 103008 ||||| Sbjct 164599 GTCATC 164594 >seq1127 Length=645582 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 102812 ACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCA 102871 ||||| ||||| || || || | || || |||||||| ||| | | | || || ||| Sbjct 573846 ACATCAGAAGTAGGATAAGCAGCACAAGTGAGAACAAACCCTTCACCAATCTGTTCATCA 573905 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931 || || || ||| || ||||| |||| || || ||| ||||||||||| | Sbjct 573906 TCAAGGAAACTTTGGTCAGACTGATCAACAGATCCAGACACAACTTTACCAGCACAGCTC 573965 Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991 ||||| | ||||||||| || || || |||| ||| | || ||||| || || ||||| Sbjct 573966 GAACAAGAACCAGCACGGCAAGAGTATGGCAAATCGATTCCAGCTTCCTCGGCCGCGTCA 574025 Query 102992 AGAATATATTGATCATCCTCACAGGTGATATCATGATCACCTTCGGATGT 103041 |||| || || || ||||| || || || |||||||| | ||| Sbjct 574026 AGAACGTAAACGTCGTCGTCACACTCAATCTCTTGCTCACCTTCTGGTGT 574075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633495869538120