Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq1257 98.7 1e-15
seq1127 95.1 2e-14
>seq1257
Length=180379
Score = 98.7 bits (108), Expect = 1e-15
Identities = 135/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 102824 GGGTATGCCACGCAGGTCAGAACAAAACC-TGCTTCTAGTTGATCGTCATCCAGAAAGGA 102882
||||| ||||| || |||| ||| |||| | || | ||| | | || || ||||| ||
Sbjct 164778 GGGTAAGCCACACAAGTCAACACATAACCCTTCTCCAAGTGGCTA-TCCTCAAGAAACGA 164720
Query 102883 TTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACC 102942
|||| || || || | ||||| |||||| ||| || ||||| |||||||||||
Sbjct 164719 ACCATCTGACTGGTCAACGTTGCCCGACACAATCTGACCCGCGCAAGTGGAACACGCACC 164660
Query 102943 AGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTG 103002
||| | || || ||||||| ||||| ||||| || ||||| || || | || |||||
Sbjct 164659 AGCTCTGCAAGAGTAAGGCAAGTCAACTCCTGCCTCTTCAGCTGCATCCAAGATGTATTG 164600
Query 103003 ATCATC 103008
|||||
Sbjct 164599 GTCATC 164594
>seq1127
Length=645582
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 102812 ACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCA 102871
||||| ||||| || || || | || || |||||||| ||| | | | || || |||
Sbjct 573846 ACATCAGAAGTAGGATAAGCAGCACAAGTGAGAACAAACCCTTCACCAATCTGTTCATCA 573905
Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931
|| || || ||| || ||||| |||| || || ||| ||||||||||| |
Sbjct 573906 TCAAGGAAACTTTGGTCAGACTGATCAACAGATCCAGACACAACTTTACCAGCACAGCTC 573965
Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991
||||| | ||||||||| || || || |||| ||| | || ||||| || || |||||
Sbjct 573966 GAACAAGAACCAGCACGGCAAGAGTATGGCAAATCGATTCCAGCTTCCTCGGCCGCGTCA 574025
Query 102992 AGAATATATTGATCATCCTCACAGGTGATATCATGATCACCTTCGGATGT 103041
|||| || || || ||||| || || || |||||||| | |||
Sbjct 574026 AGAACGTAAACGTCGTCGTCACACTCAATCTCTTGCTCACCTTCTGGTGT 574075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633495869538120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |