Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1180 131 2e-25 seq2219 107 2e-18 >seq1180 Length=4302264 Score = 131 bits (144), Expect = 2e-25 Identities = 172/234 (74%), Gaps = 16/234 (7%) Strand=Plus/Minus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || || |||||||| || || |||||||| || |||||||||||||| ||||| | Sbjct 2981153 CTTGAGCAGTACAGATGTTGCTAGTGGCTTTGTCCCTCCTAATATGCTGCTCCCTAGTCT 2981094 Query 139375 GTAGTGCTAATCTGTATGCAG-GATTGCCTTCGCTG-----TCCACTGACTGA--CCTAC 139426 | | || | || |||| | |||| ||| ||| || || ||| | || | Sbjct 2981093 GCATAGCCA-----TACGCAGAGCTTGCTTTC-CTGAAGAATCAAC--ACTAATACCAAT 2981042 Query 139427 AATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGG 139486 ||| || ||||| ||| |||||||||||| | || || || ||||| ||||||||||| Sbjct 2981041 AATCCTCCCAGGCATCATTCTCTTATACTCTTGTGAAGTAGCCAAGAACGCAGCATGAGG 2980982 Query 139487 ACCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 ||||| || ||||| |||| |||||||||||| ||| ||| ||||||| Sbjct 2980981 GCCTCCATAACCCATGGGAACACCAAACCTTTGAGCTGAACCAACAACAATATC 2980928 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | ||| || |||||||| ||||| | |||||||| ||||||||||| Sbjct 2983010 AAATGGTGCCAAATGATTCTTCACACCAATGGGACCCATACCAGGACCACCACCTCCATG 2982951 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 2982950 AGGAATACAGAAGGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 2982902 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||||||||| || || || || ||||||| | || || || || | || || | || Sbjct 2980612 CATTGCCTCCGCAGCAGCGGTCCCTTCATCCAGAAGGGACGCATTCGACATAGGAAGCCC 2980553 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || ||||| | ||| ||| |||||| | | ||| | | |||||||| || Sbjct 2980552 CGTGAGATCGGTGATCACCGTCTGGAAATTGAGCAGCGATTCGAGACGACCCTGAGAGAT 2980493 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||||||||||| |||||||| ||||||||| |||||||| Sbjct 2980492 CTCAGCTTGATAAGGAGTGTATTGAGTGTACCAAGCTGGATTCTC 2980448 >seq2219 Length=261419 Score = 107 bits (118), Expect = 2e-18 Identities = 153/211 (73%), Gaps = 16/211 (8%) Strand=Plus/Plus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || || |||||||| ||||| ||||| || || | |||||||| || ||||| || Sbjct 20272 TGAGCGGTACAGATGTTGCTGGTAGCTTTATCCCTACGGATATGCTGTTCCCTAGTCTGC 20331 Query 139377 AGTGCTAATCTGTATGCAG-GATTGCCTTCGCTG-----TC--CACTGACTGACCTACAA 139428 | || | || ||| | |||| ||| | | || |||| || ||| | || Sbjct 20332 ATAGCCA-----TACGCAAAGCTTGC-TTCCCGGAAGAATCAACACTAAC--ACCAATAA 20383 Query 139429 TTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGAC 139488 |||| ||||| ||| |||||||||||| | || || || ||||| ||||||||||||| Sbjct 20384 TTCTCCCAGGCATCATTCTCTTATACTCTTGTGAAGTAGCCAAGAAAGCAGCATGAGGAC 20443 Query 139489 CTCCGTATCCCATAGGAATACCAAACCTTTG 139519 | || || ||||| |||| ||||||||| || Sbjct 20444 CACCATAACCCATGGGAACACCAAACCTCTG 20474 Score = 105 bits (116), Expect = 8e-18 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| || || || || || || ||||||| | | || ||||| | || ||||| || Sbjct 20811 CATCGCTTCCGCAGCCGCCGTACCTTCATCGAGCAACGAAGCGTTCGACATCGGTAAACC 20870 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| || || || | ||| |||||||||| |||| ||| | ||||| ||||| || Sbjct 20871 GGTAAGATCAGTAATAACCGTCTGGTAATTGAGCAAAGATTCAAGCCTTCCTTGAGAAAT 20930 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGC 140036 |||||||||||| ||||| || || |||||| ||||||||| | || || ||| Sbjct 20931 CTCAGCTTGATAAGGAGTATATTGAGTATACCAAGCAGGATTCTCCATAATATTACGC 20988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578982195282280