Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq1180 131 2e-25
seq2219 107 2e-18
>seq1180
Length=4302264
Score = 131 bits (144), Expect = 2e-25
Identities = 172/234 (74%), Gaps = 16/234 (7%)
Strand=Plus/Minus
Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374
|||| || || |||||||| || || |||||||| || |||||||||||||| ||||| |
Sbjct 2981153 CTTGAGCAGTACAGATGTTGCTAGTGGCTTTGTCCCTCCTAATATGCTGCTCCCTAGTCT 2981094
Query 139375 GTAGTGCTAATCTGTATGCAG-GATTGCCTTCGCTG-----TCCACTGACTGA--CCTAC 139426
| | || | || |||| | |||| ||| ||| || || ||| | || |
Sbjct 2981093 GCATAGCCA-----TACGCAGAGCTTGCTTTC-CTGAAGAATCAAC--ACTAATACCAAT 2981042
Query 139427 AATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGG 139486
||| || ||||| ||| |||||||||||| | || || || ||||| |||||||||||
Sbjct 2981041 AATCCTCCCAGGCATCATTCTCTTATACTCTTGTGAAGTAGCCAAGAACGCAGCATGAGG 2980982
Query 139487 ACCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540
||||| || ||||| |||| |||||||||||| ||| ||| |||||||
Sbjct 2980981 GCCTCCATAACCCATGGGAACACCAAACCTTTGAGCTGAACCAACAACAATATC 2980928
Score = 93.3 bits (102), Expect = 5e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220
|||||||| | ||| || |||||||| ||||| | |||||||| |||||||||||
Sbjct 2983010 AAATGGTGCCAAATGATTCTTCACACCAATGGGACCCATACCAGGACCACCACCTCCATG 2982951
Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269
||||||||||| ||||| || | ||| ||||| || ||||| || |||
Sbjct 2982950 AGGAATACAGAAGGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 2982902
Score = 91.5 bits (100), Expect = 2e-13
Identities = 119/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918
||||||||| || || || || ||||||| | || || || || | || || | ||
Sbjct 2980612 CATTGCCTCCGCAGCAGCGGTCCCTTCATCCAGAAGGGACGCATTCGACATAGGAAGCCC 2980553
Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978
|| || || ||||| | ||| ||| |||||| | | ||| | | |||||||| ||
Sbjct 2980552 CGTGAGATCGGTGATCACCGTCTGGAAATTGAGCAGCGATTCGAGACGACCCTGAGAGAT 2980493
Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023
|||||||||||| |||||||| ||||||||| ||||||||
Sbjct 2980492 CTCAGCTTGATAAGGAGTGTATTGAGTGTACCAAGCTGGATTCTC 2980448
>seq2219
Length=261419
Score = 107 bits (118), Expect = 2e-18
Identities = 153/211 (73%), Gaps = 16/211 (8%)
Strand=Plus/Plus
Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376
|| || || |||||||| ||||| ||||| || || | |||||||| || ||||| ||
Sbjct 20272 TGAGCGGTACAGATGTTGCTGGTAGCTTTATCCCTACGGATATGCTGTTCCCTAGTCTGC 20331
Query 139377 AGTGCTAATCTGTATGCAG-GATTGCCTTCGCTG-----TC--CACTGACTGACCTACAA 139428
| || | || ||| | |||| ||| | | || |||| || ||| | ||
Sbjct 20332 ATAGCCA-----TACGCAAAGCTTGC-TTCCCGGAAGAATCAACACTAAC--ACCAATAA 20383
Query 139429 TTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGAC 139488
|||| ||||| ||| |||||||||||| | || || || ||||| |||||||||||||
Sbjct 20384 TTCTCCCAGGCATCATTCTCTTATACTCTTGTGAAGTAGCCAAGAAAGCAGCATGAGGAC 20443
Query 139489 CTCCGTATCCCATAGGAATACCAAACCTTTG 139519
| || || ||||| |||| ||||||||| ||
Sbjct 20444 CACCATAACCCATGGGAACACCAAACCTCTG 20474
Score = 105 bits (116), Expect = 8e-18
Identities = 130/178 (73%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918
||| || || || || || || ||||||| | | || ||||| | || ||||| ||
Sbjct 20811 CATCGCTTCCGCAGCCGCCGTACCTTCATCGAGCAACGAAGCGTTCGACATCGGTAAACC 20870
Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978
||||| || || || | ||| |||||||||| |||| ||| | ||||| ||||| ||
Sbjct 20871 GGTAAGATCAGTAATAACCGTCTGGTAATTGAGCAAAGATTCAAGCCTTCCTTGAGAAAT 20930
Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGC 140036
|||||||||||| ||||| || || |||||| ||||||||| | || || |||
Sbjct 20931 CTCAGCTTGATAAGGAGTATATTGAGTATACCAAGCAGGATTCTCCATAATATTACGC 20988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578982195282280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |