Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq1127 143 4e-29
seq916 132 6e-26
seq915 113 6e-20
>seq1127
Length=645582
Score = 143 bits (158), Expect = 4e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680
||||||| | ||||||||| ||||||||||||| ||||| ||| |||||||||| |||
Sbjct 573822 TCTTCTTTGTGAGTTTCAATGGTAACATCAGAAGTAGGATAAGCAGCACAAGTGAGAACA 573881
Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740
|||||||| |||| || |||||||| | ||| || ||| || || || | |||
Sbjct 573882 AACCCTTCACCAATCTGTTCATCATCAAGGAAACTTTGGTCAGACTGATCAACAGATCCA 573941
Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800
|| |||| ||||| ||||| ||||| | ||| ||||| |||||||| |||||
Sbjct 573942 GACACAACTTTACCAGCACAGCTCGAACAAGAACCAGCACGGCAAGAGTATGGCAAATCG 574001
Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832
| ||| ||||||| || || ||||| | |||
Sbjct 574002 ATTCCAGCTTCCTCGGCCGCGTCAAGAACGTA 574033
>seq916
Length=372641
Score = 132 bits (146), Expect = 6e-26
Identities = 196/278 (71%), Gaps = 0/278 (0%)
Strand=Plus/Minus
Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045
|| || || ||||| ||| | || ||| |||||||||||| |||| || || || ||
Sbjct 166657 GCAGGCAGCACATGAGAATTCTCCGGGTGGAAATTATCATTTTGACCGTACAGATTCGTG 166598
Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105
||||| ||||| |||| || || ||| | |||| || ||||||||||| ||
Sbjct 166597 GGCATACCGGAGATGGCATCCCATTGATGCTGAAGCCGGTAAGCTTGACACATCTTAATC 166538
Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGA 47165
|| || ||||| ||||| || || | || ||| | |||||||| |||||| | | ||
Sbjct 166537 CCTGCGATCTTGGCAATTGCGTACCATTCGTTAGTCGGTTCAAGCGGACCAGTAAGAAGC 166478
Query 47166 TATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAAT 47225
||| ||| ||||| | ||||| || |||||||| || |||||||||||
Sbjct 166477 GCAGATTCAGGAATCGGTTGAGGAGCGAATTTGGGGTAAATGCAAGATGAACCAAGAAAG 166418
Query 47226 AAAAGTTTCTTAACACCAAACTTACGTGCAGAATGAAT 47263
| |||||||| |||||| |||| ||||| || ||
Sbjct 166417 AGGAGTTTCTTCACACCATGCTTATAAGCAGAGTGGAT 166380
>seq915
Length=2307619
Score = 113 bits (124), Expect = 6e-20
Identities = 248/370 (67%), Gaps = 4/370 (1%)
Strand=Plus/Plus
Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045
|| ||||| ||||| ||| | || ||| |||||| ||||| |||||||| || || |||
Sbjct 1961729 GCAGGAAGCACATGAGAATTCTCCGGGTGAAAATTGTCATTAGGACCATAGAGATTAGTA 1961788
Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105
||||| |||||| |||| |||| | ||| | || ||||| || |||| ||
Sbjct 1961789 GGCATGCCAGAGATCGCATCCCATCCGTGCTGAATCCGATAAGCCTGGCAAGTCTTAATC 1961848
Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGA 47165
|| || ||||| ||||||||||| | |||||| | |||||||| | | | | | |
Sbjct 1961849 CCTGCGATCTTAGCAATAGCATACCACTCATTAGTTGGTTCAAGCGATGCGGTTAACAAA 1961908
Query 47166 TATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAAT 47225
|| ||| || || | ||||| || ||||||||||| || ||||| ||
Sbjct 1961909 GCAGACTCAGGAATTGGCTGAGGAGCAAATTTGGGGTAAATGCAGGATGATCCAAGGAAG 1961968
Query 47226 AAAAGTTTCTTAACACCAAACTTACGT--GCAGAATGAATGATGTTTGATTGAATCATCA 47283
| ||| ||||| | || || ||| ||||| || || | || | |||||| |
Sbjct 1961969 AGAAGCTTCTTGATGCCGTGCT--CGTAAGCAGAGTGGATCACATTGGTCTGAATCTGGA 1962026
Query 47284 AATTATCATAGATGAAGTGTCCGGGATAATCCTTATTAGCACCAATACCACCCACCTTTG 47343
||| || ||||| | | |||||| || |||||| ||| ||||| || || |
Sbjct 1962027 GATTGACACCAATGAAATCAGCAGGATAAGTGTTGTTAGCATGAATCCCACCAACTTTAG 1962086
Query 47344 CAGCAGCAAG 47353
| || || ||
Sbjct 1962087 CTGCTGCTAG 1962096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665475774475480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |