Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1127 143 4e-29 seq916 132 6e-26 seq915 113 6e-20 >seq1127 Length=645582 Score = 143 bits (158), Expect = 4e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | ||||||||| ||||||||||||| ||||| ||| |||||||||| ||| Sbjct 573822 TCTTCTTTGTGAGTTTCAATGGTAACATCAGAAGTAGGATAAGCAGCACAAGTGAGAACA 573881 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 |||||||| |||| || |||||||| | ||| || ||| || || || | ||| Sbjct 573882 AACCCTTCACCAATCTGTTCATCATCAAGGAAACTTTGGTCAGACTGATCAACAGATCCA 573941 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || |||| ||||| ||||| ||||| | ||| ||||| |||||||| ||||| Sbjct 573942 GACACAACTTTACCAGCACAGCTCGAACAAGAACCAGCACGGCAAGAGTATGGCAAATCG 574001 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | ||| ||||||| || || ||||| | ||| Sbjct 574002 ATTCCAGCTTCCTCGGCCGCGTCAAGAACGTA 574033 >seq916 Length=372641 Score = 132 bits (146), Expect = 6e-26 Identities = 196/278 (71%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || || || ||||| ||| | || ||| |||||||||||| |||| || || || || Sbjct 166657 GCAGGCAGCACATGAGAATTCTCCGGGTGGAAATTATCATTTTGACCGTACAGATTCGTG 166598 Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105 ||||| ||||| |||| || || ||| | |||| || ||||||||||| || Sbjct 166597 GGCATACCGGAGATGGCATCCCATTGATGCTGAAGCCGGTAAGCTTGACACATCTTAATC 166538 Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGA 47165 || || ||||| ||||| || || | || ||| | |||||||| |||||| | | || Sbjct 166537 CCTGCGATCTTGGCAATTGCGTACCATTCGTTAGTCGGTTCAAGCGGACCAGTAAGAAGC 166478 Query 47166 TATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAAT 47225 ||| ||| ||||| | ||||| || |||||||| || ||||||||||| Sbjct 166477 GCAGATTCAGGAATCGGTTGAGGAGCGAATTTGGGGTAAATGCAAGATGAACCAAGAAAG 166418 Query 47226 AAAAGTTTCTTAACACCAAACTTACGTGCAGAATGAAT 47263 | |||||||| |||||| |||| ||||| || || Sbjct 166417 AGGAGTTTCTTCACACCATGCTTATAAGCAGAGTGGAT 166380 >seq915 Length=2307619 Score = 113 bits (124), Expect = 6e-20 Identities = 248/370 (67%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || ||||| ||||| ||| | || ||| |||||| ||||| |||||||| || || ||| Sbjct 1961729 GCAGGAAGCACATGAGAATTCTCCGGGTGAAAATTGTCATTAGGACCATAGAGATTAGTA 1961788 Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105 ||||| |||||| |||| |||| | ||| | || ||||| || |||| || Sbjct 1961789 GGCATGCCAGAGATCGCATCCCATCCGTGCTGAATCCGATAAGCCTGGCAAGTCTTAATC 1961848 Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGA 47165 || || ||||| ||||||||||| | |||||| | |||||||| | | | | | | Sbjct 1961849 CCTGCGATCTTAGCAATAGCATACCACTCATTAGTTGGTTCAAGCGATGCGGTTAACAAA 1961908 Query 47166 TATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAAT 47225 || ||| || || | ||||| || ||||||||||| || ||||| || Sbjct 1961909 GCAGACTCAGGAATTGGCTGAGGAGCAAATTTGGGGTAAATGCAGGATGATCCAAGGAAG 1961968 Query 47226 AAAAGTTTCTTAACACCAAACTTACGT--GCAGAATGAATGATGTTTGATTGAATCATCA 47283 | ||| ||||| | || || ||| ||||| || || | || | |||||| | Sbjct 1961969 AGAAGCTTCTTGATGCCGTGCT--CGTAAGCAGAGTGGATCACATTGGTCTGAATCTGGA 1962026 Query 47284 AATTATCATAGATGAAGTGTCCGGGATAATCCTTATTAGCACCAATACCACCCACCTTTG 47343 ||| || ||||| | | |||||| || |||||| ||| ||||| || || | Sbjct 1962027 GATTGACACCAATGAAATCAGCAGGATAAGTGTTGTTAGCATGAATCCCACCAACTTTAG 1962086 Query 47344 CAGCAGCAAG 47353 | || || || Sbjct 1962087 CTGCTGCTAG 1962096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665475774475480