Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq894 147 3e-30
seq945 132 6e-26
seq1757 131 2e-25
seq772 127 2e-24
seq1009 91.5 2e-13
seq1432 87.8 2e-12
seq1163 86.0 7e-12
seq2209 84.2 3e-11
seq778 84.2 3e-11
>seq894
Length=3336090
Score = 147 bits (162), Expect = 3e-30
Identities = 251/361 (70%), Gaps = 10/361 (3%)
Strand=Plus/Minus
Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296
||||| ||||| ||| | || ||||| | || | ||||||| ||||||| |||
Sbjct 2655186 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCAGTTGGTGCCCGGATCCCCAAAGGT 2655127
Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356
| || || | ||| || ||||| || || ||||| || || |||||| || |||
Sbjct 2655126 GTTCTCCTTGTTGGTCCTCCTGGTACTGGGAAAACCCTGCTGGCAAAAGCCATTGCTGGT 2655067
Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414
||| | ||| || ||| | ||| ||| | | | ||||| ||||||||||| |
Sbjct 2655066 GAAGCCGGTGTGCCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTTGAGATGTTTGTCG 2655009
Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474
|||| |||||| ||| || |||||||| || ||| ||| |||||| ||||| |
Sbjct 2655008 GTGTTGGTGCCTCAAGAGTCCGCGATCTTTTCAAAAAAGCCAAAGAAAATGCTCCATGCA 2654949
Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531
|||| ||| | ||||| || ||||| || || | |||| | | |||| ||||
Sbjct 2654948 TTGTTTTCGTGGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACTGGAATTGGT---G 2654892
Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591
|| ||||| || |||||||| || ||||||| || || || ||||||||||| ||||
Sbjct 2654891 GAGGTAATGATGAAAGAGAACAGACCCTTAATCAGCTCCTGACTGAGATGGATGGTTTTG 2654832
Query 175592 A 175592
|
Sbjct 2654831 A 2654831
>seq945
Length=941802
Score = 132 bits (146), Expect = 6e-26
Identities = 200/280 (71%), Gaps = 6/280 (2%)
Strand=Plus/Minus
Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373
||| |||||||| ||||| ||||| || | || | || || || || || || ||
Sbjct 882375 GCCTGGTACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAGGCAGGAGTACCGTT 882316
Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433
| || ||| | ||| || | ||||||||| | ||||||||||||||||| || ||
Sbjct 882315 CTTCTCTTGCGCGGCCTCAGAGTTTGTGGAGCTTTTTGTTGGTGTGGGTGCATCTAGAGT 882256
Query 175434 TCGCGATCTCTTTGAAATCGC-CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492
| | ||| | || || | || | ||| | ||| |||||||| |||||||||||||
Sbjct 882255 TAGGGATTTGTTCGAGAAGGCTAAGTCGAAAGC-ACCTTGTATTGTATTCATTGATGAGA 882197
Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550
|||| || || || | ||| | | ||||| ||| | | || |||||| ||||||||
Sbjct 882196 TTGACGCTGTTGGGAGGCAGAGAGGAGCTGGGATGGGAGG--AGGAAATGATGAGAGAGA 882139
Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590
||| || |||||||| | | || ||||||||||| |||
Sbjct 882138 ACAGACTATTAATCAGTTGTTGACGGAGATGGATGGATTT 882099
>seq1757
Length=376612
Score = 131 bits (144), Expect = 2e-25
Identities = 278/414 (67%), Gaps = 6/414 (1%)
Strand=Plus/Plus
Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296
||||| ||||| ||| |||||||||||| || |||||||||||| || |||
Sbjct 158472 GTGGAGTTTCTGAAGAAACCCGAGAGATTCACTGCGGTTGGTGCCAAGATTCCGAAAGGT 158531
Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356
| || || ||| || ||||| || || ||||| | || |||||| || |||
Sbjct 158532 GTTCTCCTTATTGGTCCCCCTGGTACTGGGAAAACCCTTTTGGCAAAAGCCATTGCTGGT 158591
Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416
||| | ||| || ||| || ||||| | | ||||| ||||||||||| |||
Sbjct 158592 GAAGCTGGTGTGCCTTTCTTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCGGT 158651
Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476
|| |||||| ||| || || ||||| || | | ||| || || || || |||
Sbjct 158652 GTTGGTGCCTCAAGAGTCCGTGATCTTTTCAAGAAAGCCAAGGAGAACGCTCCTTGCATT 158711
Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533
||||| | ||||| || ||||| || || | |||| | | | || |||| |
Sbjct 158712 GTCTTTGTAGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---GGA 158768
Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593
| ||||| || |||||||| || | ||||| || || || ||||||||||| |||||
Sbjct 158769 GGTAATGATGAAAGAGAACAGACCCTCAATCAGCTCCTAACTGAGATGGATGGTTTTGAA 158828
Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647
| | ||||| || | || |||| || || ||| | | || || ||||||
Sbjct 158829 GGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGAT 158882
>seq772
Length=329654
Score = 127 bits (140), Expect = 2e-24
Identities = 199/282 (71%), Gaps = 12/282 (4%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| |||||||| ||||| || | || |||| | || || ||| || || || |||
Sbjct 253113 CCGGGTACGGGGAAGACGCTTTTGGCTAGAGCTGTGGCTGGAGAAGCAGGAGTGCCGTTC 253172
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
| ||| |||| | | ||||||||| | ||||||||||||||||| || |||
Sbjct 253173 TTTTCGTGTGCTGCTTCGGAGTTTGTGGAGCTTTTTGTTGGTGTGGGTGCTTCTAGAGTT 253232
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490
| ||| | ||||| | || |||| || || |||||||| || ||||||||
Sbjct 253233 AGGGATTTGTTTGAGAAGGC----GAAATCGAAAGCTCCTTGTATTGTGTTTATTGATGA 253288
Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGA 175548
||||||||| ||||| | |||| | | ||||| ||| | | |||||| ||||||
Sbjct 253289 GATTGATGCTGTGGGTAGGCAAAGAGGAGCTGGGATGGGTGGT--GGAAATGATGAGAGA 253346
Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590
||||| || |||||||| || | || ||||||||||| |||
Sbjct 253347 GAACAGACGATTAATCAGCTTTTGACTGAGATGGATGGGTTT 253388
>seq1009
Length=3105692
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 76757 ACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 76816
|| || ||||| || ||| || | || ||||||||||||| |||||||| ||||
Sbjct 1457598 ACTGTCTGGGAGATTAAGCAGAGAACAGTGGTTGACATGGCCGCCGATCGTGGATGCTTT 1457657
Query 76817 ATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCT 76876
|| |||||||| |||||| ||||| || |||||||| |||| | | || ||| ||
Sbjct 1457658 ATAGATCAAAGCCAAAGTTTGAATATACACATGGAAAAGCCAAACTTTGCAAAACTCACT 1457717
Query 76877 TCTATGCATATGTACGCGTGGAAACAGG 76904
||| | || | ||||| |||||| |||
Sbjct 1457718 TCTTTACACTTCTACGCTTGGAAAAAGG 1457745
>seq1432
Length=495105
Score = 87.8 bits (96), Expect = 2e-12
Identities = 153/222 (69%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055
|| ||| |||| | || ||| | |||||| || ||||||||||||||||| | ||
Sbjct 65841 GCAATCGAAACAATTCCTTGTGTGACGAAGAAAGCAGAATGGGCAATGAAATGGATCAAC 65900
Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115
| |||| |||||| ||| | | | || ||||| || || || ||||| |||
Sbjct 65901 GGA---TCTCAAAGCTTCGCTGAGAGAATCGTAGCTTTTGCTTGCGTTGAAGGTATATTC 65957
Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175
||||| || || || | || | ||||||||||| || ||| | ||||| || ||
Sbjct 65958 TTCTCTGGTAGCTTTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTC 66017
Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217
||||| || ||| | ||||| |||| || ||||| |||
Sbjct 66018 ACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCAC 66059
>seq1163
Length=414626
Score = 86.0 bits (94), Expect = 7e-12
Identities = 163/237 (69%), Gaps = 5/237 (2%)
Strand=Plus/Minus
Query 75120 ATACGAAGCGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA-- 75177
|||||| || || | ||||| || ||||||||| | ||||| ||||||| | ||
Sbjct 27305 ATACGAC-CGTGATTTTGATTATGATTACTTTGGATTTAAAACACTTGAGAGGTTGTACC 27247
Query 75178 TCTTCAACGGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGC 75237
|||| || | || |||| | | | |||| || || ||||| ||||| | || |
Sbjct 27246 TCTTGAAAG--TCCATGGGAAAGTTGTTGAAAGGCCTCAACACATGCTCATGAGAGTTTC 27189
Query 75238 AATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA 75297
| ||||| ||| |||||| |||||||||| | | || ||| | |||||| ||
Sbjct 27188 TGTTGGCATTCACATGGAAGATATTGATTCTGCAATCAAAACTTACCATTTGATGTCTCA 27129
Query 75298 AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
| |||||| ||| ||| | || | ||||||||||| || || ||||| || ||
Sbjct 27128 GAGATTGTTCACTCATGCATCTCCTATTCTCTTCAATGCAGGAACTCCAAGGCCTCA 27072
>seq2209
Length=1804222
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/133 (74%), Gaps = 6/133 (5%)
Strand=Plus/Minus
Query 177744 AGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGAT 177803
||| || ||| | || || |||| | |||| | ||||| |||||||||||||||||
Sbjct 119037 AGTGATTTTCCTAGTCACGAAGTTCTCGCCTCTGCGAGGTGACTCGTGGTTGAAGAGGAT 118978
Query 177804 TCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGAC---GAGCCAGTGAGC 177860
|||| |||||| |||| ||| |||| ||||||||| ||||| | ||| |||||
Sbjct 118977 TCCGTTGCAGGCGTACAGACCGTAGGCCTCTCGGTAA---TTGACAGTGTACCAATGAGC 118921
Query 177861 GGCCAATTTGGAG 177873
|| ||||||||
Sbjct 118920 AGCGCATTTGGAG 118908
>seq778
Length=452071
Score = 84.2 bits (92), Expect = 3e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 76163 AATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTG 76222
|||| ||||| || |||||||| || || || ||||||||||||||||||||| |
Sbjct 424352 AATTACTATCCTGTGGAGACTGCAAAAACTTCAAACATGCGACACAGACCTATTGGTATC 424411
Query 76223 GGTGTTCAAGGTCTCGCGGATGTATTTAT 76251
||||| |||||||| || |||| ||||||
Sbjct 424412 GGTGTACAAGGTCTTGCAGATGCATTTAT 424440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596552903508320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |