Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq894 147 3e-30 seq945 132 6e-26 seq1757 131 2e-25 seq772 127 2e-24 seq1009 91.5 2e-13 seq1432 87.8 2e-12 seq1163 86.0 7e-12 seq2209 84.2 3e-11 seq778 84.2 3e-11 >seq894 Length=3336090 Score = 147 bits (162), Expect = 3e-30 Identities = 251/361 (70%), Gaps = 10/361 (3%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | || | ||||||| ||||||| ||| Sbjct 2655186 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCAGTTGGTGCCCGGATCCCCAAAGGT 2655127 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || | ||| || ||||| || || ||||| || || |||||| || ||| Sbjct 2655126 GTTCTCCTTGTTGGTCCTCCTGGTACTGGGAAAACCCTGCTGGCAAAAGCCATTGCTGGT 2655067 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||| | | | ||||| ||||||||||| | Sbjct 2655066 GAAGCCGGTGTGCCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTTGAGATGTTTGTCG 2655009 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| |||||| ||| || |||||||| || ||| ||| |||||| ||||| | Sbjct 2655008 GTGTTGGTGCCTCAAGAGTCCGCGATCTTTTCAAAAAAGCCAAAGAAAATGCTCCATGCA 2654949 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 |||| ||| | ||||| || ||||| || || | |||| | | |||| |||| Sbjct 2654948 TTGTTTTCGTGGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACTGGAATTGGT---G 2654892 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || ||||||| || || || ||||||||||| |||| Sbjct 2654891 GAGGTAATGATGAAAGAGAACAGACCCTTAATCAGCTCCTGACTGAGATGGATGGTTTTG 2654832 Query 175592 A 175592 | Sbjct 2654831 A 2654831 >seq945 Length=941802 Score = 132 bits (146), Expect = 6e-26 Identities = 200/280 (71%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 ||| |||||||| ||||| ||||| || | || | || || || || || || || Sbjct 882375 GCCTGGTACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAGGCAGGAGTACCGTT 882316 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || ||| | ||| || | ||||||||| | ||||||||||||||||| || || Sbjct 882315 CTTCTCTTGCGCGGCCTCAGAGTTTGTGGAGCTTTTTGTTGGTGTGGGTGCATCTAGAGT 882256 Query 175434 TCGCGATCTCTTTGAAATCGC-CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | | ||| | || || | || | ||| | ||| |||||||| ||||||||||||| Sbjct 882255 TAGGGATTTGTTCGAGAAGGCTAAGTCGAAAGC-ACCTTGTATTGTATTCATTGATGAGA 882197 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 |||| || || || | ||| | | ||||| ||| | | || |||||| |||||||| Sbjct 882196 TTGACGCTGTTGGGAGGCAGAGAGGAGCTGGGATGGGAGG--AGGAAATGATGAGAGAGA 882139 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || |||||||| | | || ||||||||||| ||| Sbjct 882138 ACAGACTATTAATCAGTTGTTGACGGAGATGGATGGATTT 882099 >seq1757 Length=376612 Score = 131 bits (144), Expect = 2e-25 Identities = 278/414 (67%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| |||||||||||| || |||||||||||| || ||| Sbjct 158472 GTGGAGTTTCTGAAGAAACCCGAGAGATTCACTGCGGTTGGTGCCAAGATTCCGAAAGGT 158531 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || ||||| | || |||||| || ||| Sbjct 158532 GTTCTCCTTATTGGTCCCCCTGGTACTGGGAAAACCCTTTTGGCAAAAGCCATTGCTGGT 158591 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||||| | | ||||| ||||||||||| ||| Sbjct 158592 GAAGCTGGTGTGCCTTTCTTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCGGT 158651 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || |||||| ||| || || ||||| || | | ||| || || || || ||| Sbjct 158652 GTTGGTGCCTCAAGAGTCCGTGATCTTTTCAAGAAAGCCAAGGAGAACGCTCCTTGCATT 158711 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533 ||||| | ||||| || ||||| || || | |||| | | | || |||| | Sbjct 158712 GTCTTTGTAGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---GGA 158768 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | ||||| || |||||||| || | ||||| || || || ||||||||||| ||||| Sbjct 158769 GGTAATGATGAAAGAGAACAGACCCTCAATCAGCTCCTAACTGAGATGGATGGTTTTGAA 158828 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 | | ||||| || | || |||| || || ||| | | || || |||||| Sbjct 158829 GGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGAT 158882 >seq772 Length=329654 Score = 127 bits (140), Expect = 2e-24 Identities = 199/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || |||||||| ||||| || | || |||| | || || ||| || || || ||| Sbjct 253113 CCGGGTACGGGGAAGACGCTTTTGGCTAGAGCTGTGGCTGGAGAAGCAGGAGTGCCGTTC 253172 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||| |||| | | ||||||||| | ||||||||||||||||| || ||| Sbjct 253173 TTTTCGTGTGCTGCTTCGGAGTTTGTGGAGCTTTTTGTTGGTGTGGGTGCTTCTAGAGTT 253232 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | ||| | ||||| | || |||| || || |||||||| || |||||||| Sbjct 253233 AGGGATTTGTTTGAGAAGGC----GAAATCGAAAGCTCCTTGTATTGTGTTTATTGATGA 253288 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGA 175548 ||||||||| ||||| | |||| | | ||||| ||| | | |||||| |||||| Sbjct 253289 GATTGATGCTGTGGGTAGGCAAAGAGGAGCTGGGATGGGTGGT--GGAAATGATGAGAGA 253346 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||||| || |||||||| || | || ||||||||||| ||| Sbjct 253347 GAACAGACGATTAATCAGCTTTTGACTGAGATGGATGGGTTT 253388 >seq1009 Length=3105692 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 76757 ACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 76816 || || ||||| || ||| || | || ||||||||||||| |||||||| |||| Sbjct 1457598 ACTGTCTGGGAGATTAAGCAGAGAACAGTGGTTGACATGGCCGCCGATCGTGGATGCTTT 1457657 Query 76817 ATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCT 76876 || |||||||| |||||| ||||| || |||||||| |||| | | || ||| || Sbjct 1457658 ATAGATCAAAGCCAAAGTTTGAATATACACATGGAAAAGCCAAACTTTGCAAAACTCACT 1457717 Query 76877 TCTATGCATATGTACGCGTGGAAACAGG 76904 ||| | || | ||||| |||||| ||| Sbjct 1457718 TCTTTACACTTCTACGCTTGGAAAAAGG 1457745 >seq1432 Length=495105 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 || ||| |||| | || ||| | |||||| || ||||||||||||||||| | || Sbjct 65841 GCAATCGAAACAATTCCTTGTGTGACGAAGAAAGCAGAATGGGCAATGAAATGGATCAAC 65900 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 | |||| |||||| ||| | | | || ||||| || || || ||||| ||| Sbjct 65901 GGA---TCTCAAAGCTTCGCTGAGAGAATCGTAGCTTTTGCTTGCGTTGAAGGTATATTC 65957 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 ||||| || || || | || | ||||||||||| || ||| | ||||| || || Sbjct 65958 TTCTCTGGTAGCTTTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTC 66017 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||||| || ||| | ||||| |||| || ||||| ||| Sbjct 66018 ACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCAC 66059 >seq1163 Length=414626 Score = 86.0 bits (94), Expect = 7e-12 Identities = 163/237 (69%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 75120 ATACGAAGCGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA-- 75177 |||||| || || | ||||| || ||||||||| | ||||| ||||||| | || Sbjct 27305 ATACGAC-CGTGATTTTGATTATGATTACTTTGGATTTAAAACACTTGAGAGGTTGTACC 27247 Query 75178 TCTTCAACGGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGC 75237 |||| || | || |||| | | | |||| || || ||||| ||||| | || | Sbjct 27246 TCTTGAAAG--TCCATGGGAAAGTTGTTGAAAGGCCTCAACACATGCTCATGAGAGTTTC 27189 Query 75238 AATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA 75297 | ||||| ||| |||||| |||||||||| | | || ||| | |||||| || Sbjct 27188 TGTTGGCATTCACATGGAAGATATTGATTCTGCAATCAAAACTTACCATTTGATGTCTCA 27129 Query 75298 AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | |||||| ||| ||| | || | ||||||||||| || || ||||| || || Sbjct 27128 GAGATTGTTCACTCATGCATCTCCTATTCTCTTCAATGCAGGAACTCCAAGGCCTCA 27072 >seq2209 Length=1804222 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/133 (74%), Gaps = 6/133 (5%) Strand=Plus/Minus Query 177744 AGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGAT 177803 ||| || ||| | || || |||| | |||| | ||||| ||||||||||||||||| Sbjct 119037 AGTGATTTTCCTAGTCACGAAGTTCTCGCCTCTGCGAGGTGACTCGTGGTTGAAGAGGAT 118978 Query 177804 TCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGAC---GAGCCAGTGAGC 177860 |||| |||||| |||| ||| |||| ||||||||| ||||| | ||| ||||| Sbjct 118977 TCCGTTGCAGGCGTACAGACCGTAGGCCTCTCGGTAA---TTGACAGTGTACCAATGAGC 118921 Query 177861 GGCCAATTTGGAG 177873 || |||||||| Sbjct 118920 AGCGCATTTGGAG 118908 >seq778 Length=452071 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 76163 AATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTG 76222 |||| ||||| || |||||||| || || || ||||||||||||||||||||| | Sbjct 424352 AATTACTATCCTGTGGAGACTGCAAAAACTTCAAACATGCGACACAGACCTATTGGTATC 424411 Query 76223 GGTGTTCAAGGTCTCGCGGATGTATTTAT 76251 ||||| |||||||| || |||| |||||| Sbjct 424412 GGTGTACAAGGTCTTGCAGATGCATTTAT 424440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596552903508320