Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1432 156 6e-33 seq1891 105 1e-17 seq980 100 4e-16 seq713 100 4e-16 seq1311 96.9 5e-15 seq788 96.9 5e-15 seq912 91.5 2e-13 seq687 89.7 8e-13 seq1676 87.8 3e-12 >seq1432 Length=495105 Score = 156 bits (172), Expect = 6e-33 Identities = 369/554 (67%), Gaps = 12/554 (2%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| || |||||| ||| | |||||| ||||| || || ||||||||| || || Sbjct 66076 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTG 66017 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||||| ||||| ||| || | ||| |||||||| || |||| ||| ||| Sbjct 66016 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAG 65957 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 |||||||| |||||||| || || |||| | ||| ||||| || || || | | || Sbjct 65956 AATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCT---TTGA--GATC 65902 Query 18335 AGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392 || |||||||| |||||||||| ||| | ||| || || | || || | Sbjct 65901 CGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTG 65842 Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 | ||| | || |||| | |||||| ||||| || |||||||||| | | | || Sbjct 65841 CGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTAT 65782 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 |||| |||||||| || | || || || || || || | || || | | ||| || | Sbjct 65781 ACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTG 65722 Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 |||| ||| |||| | | | |||||| ||| || ||||| | | Sbjct 65721 AGACCTGAACATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATG 65662 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAA---ATGTTTTTCATT-ATCCTTGAGATTG 18628 ||||| || || | || | ||| ||||| | ||| || || | |||| || Sbjct 65661 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAG-TTT 65603 Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688 | ||| || | |||| || ||||| |||||||| | ||||| || || | |||| Sbjct 65602 TCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCG 65543 Query 18689 GCCTGTTTGTACAT 18702 || | |||||||| Sbjct 65542 GCTTTCTTGTACAT 65529 >seq1891 Length=27579 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| ||||| || || || || || ||| |||| Sbjct 11415 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATCACTTTGGAGGTTGAAAGTTCT 11356 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| ||| || || |||||||| || || ||||| || || Sbjct 11355 GATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAAGAGGGAATTCCTCCGGATCAG 11296 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || | || | ||| ||||||||||| |||||| Sbjct 11295 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGAT 11260 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || |||||||| || ||||| ||||| || || || ||| ||| Sbjct 11187 ATGCAGATCTTTGTGAAGACATTGACAGGGAAAACCATTACTTTGGAGGTTGAAAGTTCG 11128 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| ||| || || || || ||||| || ||||| || || Sbjct 11127 GATACGATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGAATTCCTCCGGATCAG 11068 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || || | || | | ||||| ||| Sbjct 11067 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 11008 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || || ||||| ||| | | | ||||| ||| Sbjct 11007 ATCCAGAAAGAGTCTACCCTCCATTTGGTGCTTCGTCTCAGAGGTGGT 10960 >seq980 Length=1630315 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| ||||| || || || || || ||| |||| Sbjct 2850 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATCACTTTGGAGGTTGAAAGTTCT 2791 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| ||| || || |||||||| || || ||||| || || Sbjct 2790 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAAGAGGGAATTCCTCCGGATCAG 2731 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || || | || | | ||||| ||| Sbjct 2730 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 2671 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || || ||||| ||| | | | ||||| ||| Sbjct 2670 ATCCAGAAAGAGTCTACCCTCCATTTGGTGCTTCGTCTCAGAGGTGGT 2623 >seq713 Length=176098 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| ||||| || || || || || ||| |||| Sbjct 45530 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATCACTTTGGAGGTTGAAAGTTCT 45589 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| ||| || || ||||| ||||| || ||||| || || Sbjct 45590 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 45649 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || || | || | | ||||| || Sbjct 45650 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAC 45709 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || |||||||| ||| | | | ||||| ||| Sbjct 45710 ATTCAAAAAGAGTCTACCCTTCATTTGGTGCTTCGTCTCAGAGGTGGT 45757 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||| || ||||| || || || || || Sbjct 45758 ATGCAGATTTTTGTGAAGACCCTCACTGGAAAGACCATTACTTTGGAGGTTGAGAGCTCA 45817 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| ||| || || || || ||||| || || ||||| ||| Sbjct 45818 GACACTATTGATAATGTTAAAGCTAAGATCCAGGACAAGGAAGGTATCCCACCAGACCAA 45877 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || | || | ||||||||||||||| |||||| Sbjct 45878 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAAGAT 45913 >seq1311 Length=673479 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| || || ||||| || ||||| || ||| Sbjct 79377 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 79436 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| ||| || || || || |||||||| || ||||| || || Sbjct 79437 GACACTATTGACAACGTTAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 79496 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||||||||||||| || ||| |||||| | | || || || Sbjct 79497 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGACTACAAC 79556 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| |||| ||||| Sbjct 79557 ATCCAGAAGGAGTCGACACTTCA 79579 >seq788 Length=1574065 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||||||| ||||| || || || || || ||| Sbjct 100589 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 100648 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| || || || || ||||| || || ||||| || || Sbjct 100649 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 100708 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| ||||| || ||||| ||||||||| | || || || Sbjct 100709 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAGAACTTTGGCTGACTACAAC 100768 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || || ||| | || |||||||| |||||| Sbjct 100769 ATTCAGAAGGAGTCTACCCTTCATTTGGTGTTA 100801 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||||||| ||||| || || || || || ||| Sbjct 108025 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTRGAGAGCTCT 108084 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| || || || || ||||| || || ||||| || || Sbjct 108085 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 108144 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| ||||| || ||||| ||||||||| | || || || Sbjct 108145 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAGAACTTTGGCTGACTACAAC 108204 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || || ||| | || |||||||| |||||| Sbjct 108205 ATTCAGAAGGAGTCTACCCTTCATTTGGTGTTA 108237 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||| ||||| || || || || || |||| Sbjct 693120 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGTTCT 693179 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || || || ||||| ||||| || || || || || || Sbjct 693180 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCACCGGACCAG 693239 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||||| ||||| || |||||| ||||||||| | || || || Sbjct 693240 CAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTTTGGCTGACTACAAC 693299 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || ||||| || || || Sbjct 693300 ATTCAGAAGGAGTCTACACTTCACTTGGTCTT 693331 >seq912 Length=1276171 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||| | ||| | |||||| | ||||| || || || || | || || || |||| Sbjct 750930 ATGCAAGTTTTTGTGAAAACACTCACTGGTAAGACCATCACTCTCGAGGTTGAGAGTTCT 750989 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || || || || || ||||| || ||||| || || Sbjct 750990 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAG 751049 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || ||||||||||| |||||| | | || || | ||||| ||| Sbjct 751050 CAAAGATTGATCTTCGCTGGTAAGCAGCTAGAAGATGGCCGTACCTTGGCTGATTACAAT 751109 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || || ||||| || | | |||||||| ||| Sbjct 751110 ATCCAGAAAGAATCAACACTCCATTTGGTTCTCCGGTTAAGAGGTGGT 751157 >seq687 Length=897029 Score = 89.7 bits (98), Expect = 8e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || ||||| || || | || |||||| || Sbjct 268070 ATGCAGATCTTTGTCAAGACTCTTACAGGGAAAACGATAACCCTTGAGGTCGAAAGCTCA 268129 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| || || || ||||| || ||||| |||||||| || ||| Sbjct 268130 GATACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATACCTCCGGACCAA 268189 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | |||||||||||||||||| ||| | | ||| | | ||||| || Sbjct 268190 CAGAGACTTATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGTACTCTTGCTGATTACAAC 268249 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 268250 ATCCAGAAGGAGTCAACCCTTCAT 268273 >seq1676 Length=2083552 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || ||||| || || || | || |||||| || Sbjct 1910233 ATGCAAATCTTTGTGAAGACTCTTACGGGAAAGACCATAACTCTTGAGGTCGAAAGCTCA 1910292 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || |||||||||||||| || ||||| || || Sbjct 1910293 GACACAATTGACAACGTCAAGGCCAAGATCCAAGATAAAGAAGGAATCCCTCCTGACCAG 1910352 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| |||||||| ||||| ||| | | ||| | | ||||| | | Sbjct 1910353 CAGAGGCTGATCTTTGCAGGTAAGCAACTCGAGGATGGCCGTACTCTTGCGGATTACAGT 1910412 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 1910413 ATCCAGAAAGAGTCAACACTTCA 1910435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731851516732400