Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 156 6e-33
seq1891 105 1e-17
seq980 100 4e-16
seq713 100 4e-16
seq1311 96.9 5e-15
seq788 96.9 5e-15
seq912 91.5 2e-13
seq687 89.7 8e-13
seq1676 87.8 3e-12
>seq1432
Length=495105
Score = 156 bits (172), Expect = 6e-33
Identities = 369/554 (67%), Gaps = 12/554 (2%)
Strand=Plus/Minus
Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214
||||| || |||||| ||| | |||||| ||||| || || ||||||||| || ||
Sbjct 66076 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTG 66017
Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274
| || ||||||| ||||| ||| || | ||| |||||||| || |||| ||| |||
Sbjct 66016 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAG 65957
Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334
|||||||| |||||||| || || |||| | ||| ||||| || || || | | ||
Sbjct 65956 AATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCT---TTGA--GATC 65902
Query 18335 AGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392
|| |||||||| |||||||||| ||| | ||| || || | || || |
Sbjct 65901 CGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTG 65842
Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452
| ||| | || |||| | |||||| ||||| || |||||||||| | | | ||
Sbjct 65841 CGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTAT 65782
Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512
|||| |||||||| || | || || || || || || | || || | | ||| || |
Sbjct 65781 ACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTG 65722
Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572
|||| ||| |||| | | | |||||| ||| || ||||| | |
Sbjct 65721 AGACCTGAACATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATG 65662
Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAA---ATGTTTTTCATT-ATCCTTGAGATTG 18628
||||| || || | || | ||| ||||| | ||| || || | |||| ||
Sbjct 65661 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAG-TTT 65603
Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688
| ||| || | |||| || ||||| |||||||| | ||||| || || | ||||
Sbjct 65602 TCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCG 65543
Query 18689 GCCTGTTTGTACAT 18702
|| | ||||||||
Sbjct 65542 GCTTTCTTGTACAT 65529
>seq1891
Length=27579
Score = 105 bits (116), Expect = 1e-17
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || |||||||| ||||| || || || || || ||| ||||
Sbjct 11415 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATCACTTTGGAGGTTGAAAGTTCT 11356
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| |||| || |||||| ||| || || |||||||| || || ||||| || ||
Sbjct 11355 GATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAAGAGGGAATTCCTCCGGATCAG 11296
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
|| || | || | ||| ||||||||||| ||||||
Sbjct 11295 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGAT 11260
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || |||||||| || ||||| ||||| || || || ||| |||
Sbjct 11187 ATGCAGATCTTTGTGAAGACATTGACAGGGAAAACCATTACTTTGGAGGTTGAAAGTTCG 11128
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || || ||| ||| || || || || ||||| || ||||| || ||
Sbjct 11127 GATACGATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGAATTCCTCCGGATCAG 11068
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||| ||||||||||| || || | || | | ||||| |||
Sbjct 11067 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 11008
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| |||||| | || || ||||| ||| | | | ||||| |||
Sbjct 11007 ATCCAGAAAGAGTCTACCCTCCATTTGGTGCTTCGTCTCAGAGGTGGT 10960
>seq980
Length=1630315
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || |||||||| ||||| || || || || || ||| ||||
Sbjct 2850 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATCACTTTGGAGGTTGAAAGTTCT 2791
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| |||| || || ||| ||| || || |||||||| || || ||||| || ||
Sbjct 2790 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAAGAGGGAATTCCTCCGGATCAG 2731
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||| ||||||||||| || || | || | | ||||| |||
Sbjct 2730 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 2671
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| |||||| | || || ||||| ||| | | | ||||| |||
Sbjct 2670 ATCCAGAAAGAGTCTACCCTCCATTTGGTGCTTCGTCTCAGAGGTGGT 2623
>seq713
Length=176098
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || |||||||| ||||| || || || || || ||| ||||
Sbjct 45530 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATCACTTTGGAGGTTGAAAGTTCT 45589
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| |||| || || ||| ||| || || ||||| ||||| || ||||| || ||
Sbjct 45590 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 45649
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||| ||||||||||| || || | || | | ||||| ||
Sbjct 45650 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAC 45709
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| |||||| | || |||||||| ||| | | | ||||| |||
Sbjct 45710 ATTCAAAAAGAGTCTACCCTTCATTTGGTGCTTCGTCTCAGAGGTGGT 45757
Score = 84.2 bits (92), Expect = 3e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || | |||||||| || ||||| || || || || ||
Sbjct 45758 ATGCAGATTTTTGTGAAGACCCTCACTGGAAAGACCATTACTTTGGAGGTTGAGAGCTCA 45817
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || || ||| ||| || || || || ||||| || || ||||| |||
Sbjct 45818 GACACTATTGATAATGTTAAAGCTAAGATCCAGGACAAGGAAGGTATCCCACCAGACCAA 45877
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
|| || | || | ||||||||||||||| ||||||
Sbjct 45878 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAAGAT 45913
>seq1311
Length=673479
Score = 96.9 bits (106), Expect = 5e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || ||||||| || || ||||| || ||||| || |||
Sbjct 79377 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 79436
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| ||||| ||| || || || || |||||||| || ||||| || ||
Sbjct 79437 GACACTATTGACAACGTTAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 79496
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||||||||||||||| || ||| |||||| | | || || ||
Sbjct 79497 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGACTACAAC 79556
Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025
|| || ||| |||| |||||
Sbjct 79557 ATCCAGAAGGAGTCGACACTTCA 79579
>seq788
Length=1574065
Score = 96.9 bits (106), Expect = 5e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || ||||||||||| ||||| || || || || || |||
Sbjct 100589 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 100648
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || ||| || || || || ||||| || || ||||| || ||
Sbjct 100649 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 100708
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | ||||| ||||| || ||||| ||||||||| | || || ||
Sbjct 100709 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAGAACTTTGGCTGACTACAAC 100768
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035
|| || ||| | || |||||||| ||||||
Sbjct 100769 ATTCAGAAGGAGTCTACCCTTCATTTGGTGTTA 100801
Score = 96.9 bits (106), Expect = 5e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || ||||||||||| ||||| || || || || || |||
Sbjct 108025 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTRGAGAGCTCT 108084
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || ||| || || || || ||||| || || ||||| || ||
Sbjct 108085 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 108144
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | ||||| ||||| || ||||| ||||||||| | || || ||
Sbjct 108145 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAGAACTTTGGCTGACTACAAC 108204
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035
|| || ||| | || |||||||| ||||||
Sbjct 108205 ATTCAGAAGGAGTCTACCCTTCATTTGGTGTTA 108237
Score = 95.1 bits (104), Expect = 2e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | || || ||||||||||| ||||| || || || || || ||||
Sbjct 693120 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGTTCT 693179
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || ||||| || || || ||||| ||||| || || || || || ||
Sbjct 693180 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCACCGGACCAG 693239
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||| | ||||| ||||| || |||||| ||||||||| | || || ||
Sbjct 693240 CAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTTTGGCTGACTACAAC 693299
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034
|| || ||| | || ||||| || || ||
Sbjct 693300 ATTCAGAAGGAGTCTACACTTCACTTGGTCTT 693331
>seq912
Length=1276171
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||| | ||| | |||||| | ||||| || || || || | || || || ||||
Sbjct 750930 ATGCAAGTTTTTGTGAAAACACTCACTGGTAAGACCATCACTCTCGAGGTTGAGAGTTCT 750989
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || || || || || || || ||||| || ||||| || ||
Sbjct 750990 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAG 751049
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||| | || ||||||||||| |||||| | | || || | ||||| |||
Sbjct 751050 CAAAGATTGATCTTCGCTGGTAAGCAGCTAGAAGATGGCCGTACCTTGGCTGATTACAAT 751109
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| ||||| | || || ||||| || | | |||||||| |||
Sbjct 751110 ATCCAGAAAGAATCAACACTCCATTTGGTTCTCCGGTTAAGAGGTGGT 751157
>seq687
Length=897029
Score = 89.7 bits (98), Expect = 8e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || | || || ||||| || || | || |||||| ||
Sbjct 268070 ATGCAGATCTTTGTCAAGACTCTTACAGGGAAAACGATAACCCTTGAGGTCGAAAGCTCA 268129
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || ||||| || || || ||||| || ||||| |||||||| || |||
Sbjct 268130 GATACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATACCTCCGGACCAA 268189
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||| | || | |||||||||||||||||| ||| | | ||| | | ||||| ||
Sbjct 268190 CAGAGACTTATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGTACTCTTGCTGATTACAAC 268249
Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026
|| || ||| | || ||||||
Sbjct 268250 ATCCAGAAGGAGTCAACCCTTCAT 268273
>seq1676
Length=2083552
Score = 87.8 bits (96), Expect = 3e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || | || ||||| || || || | || |||||| ||
Sbjct 1910233 ATGCAAATCTTTGTGAAGACTCTTACGGGAAAGACCATAACTCTTGAGGTCGAAAGCTCA 1910292
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| || || || |||||||||||||| || ||||| || ||
Sbjct 1910293 GACACAATTGACAACGTCAAGGCCAAGATCCAAGATAAAGAAGGAATCCCTCCTGACCAG 1910352
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || |||| | ||| |||||||| ||||| ||| | | ||| | | ||||| | |
Sbjct 1910353 CAGAGGCTGATCTTTGCAGGTAAGCAACTCGAGGATGGCCGTACTCTTGCGGATTACAGT 1910412
Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025
|| |||||| | || |||||
Sbjct 1910413 ATCCAGAAAGAGTCAACACTTCA 1910435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731851516732400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |