Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1180 120 9e-22 seq772 120 9e-22 seq945 96.9 1e-14 seq894 95.1 4e-14 seq1873 86.0 2e-11 seq854 84.2 6e-11 >seq1180 Length=4302264 Score = 120 bits (132), Expect = 9e-22 Identities = 278/412 (67%), Gaps = 18/412 (4%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| || ||||| |||||||| || || ||||| || || | ||| || ||| | Sbjct 1160764 TAAACCCGTCCATTTCAGTTAAAATCTGGTTTAGTGTCTGCTCACGTTCGTCGTTTCCTC 1160705 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| | | ||| || ||| | || | |||||||||||||| || |||||||| | Sbjct 1160704 CTCCTATA----CCGGTTC-CTC-TCATTCTCCCAACAGCATCAATCTCATCAATGAACA 1160651 Query 289058 TCACACACGGAGAAT-----TTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 | ||| || |||| |||| || | ||| || || ||||| || | ||||| Sbjct 1160650 CTATACAAGGTGAATTAGCCTTTGCCTTG---TTG--AACAAGTCTCTAACCCTAGATGC 1160596 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172 ||| | ||||||| |||| |||| || || || |||| | | | || | ||| Sbjct 1160595 TCCTACACCAACAAACATCTCTATGAACTCCGATCCGGACAATGAGAAAAACGGAACACC 1160536 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || |||| ||| | |||| || ||||| || ||||| |||||||| || Sbjct 1160535 GGCTTCTCCAGCTATAGCCTTGGCCAACAGAGTCTTTCCGGTTCCCGGTGGTCCAGTCAA 1160476 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAA 289291 | || || ||||| | ||| ||||| || || | ||||||| ||| | || || | Sbjct 1160475 CAAGACGCCTTTTGGGATTTTAGCCCC-CAAGGCTGAGAATTTCTCTGGGGTTTTCAAGA 1160417 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| || || || || | || | || || || || |||||||||||| Sbjct 1160416 ATTCAACGATCTCTTCGAAGTCTTGCTTGGCTTCGTCTACTCCTGCTACATC 1160365 >seq772 Length=329654 Score = 120 bits (132), Expect = 9e-22 Identities = 360/546 (66%), Gaps = 26/546 (5%) Strand=Plus/Minus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| |||||||||| | |||| || || ||||| ||||||| | ||| Sbjct 253510 CCAGCTACATCAGGCCTATCCACTGTGACTTGCCGGTCAAATCTACCAGGTCTCAGCAAT 253451 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAA---CAATAGATTCGGTT 288933 || | ||| | | ||| | ||| || ||||| ||||| |||| || ||| | | Sbjct 253450 GCGGAGTCAAGAACATCCGGTCTATTGGTTGCAGCCAACACAATGACACCAGAAT---TA 253394 Query 288934 TGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 ||| |||||||| || |||| ||||||| || ||||| || ||||||||| Sbjct 253393 CCAGAAAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTT 253334 Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAA 289051 ||| | || || | |||||| ||| |||| ||||||||||| || |||| Sbjct 253333 CCACCACC-----CATCCCA---GCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAA 253282 Query 289052 TGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATG 289111 | || | | ||| |||| || | |||| | |||| || || || || | || | Sbjct 253281 TAAACACAATACAAGGAGCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAG 253222 Query 289112 CTCCAAGACCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTACA 289170 | || | ||||||| | | || ||||| || ||||| | | || || ||| | || Sbjct 253221 CACCCACACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACAC-GAAAAGAACGGCACT 253163 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 |||||| || || || || || |||| ||| ||||| || || || ||||| || | Sbjct 253162 CCTGCTTCTCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGGTGGACCAACC 253103 Query 289231 AATAGAACTCCCTTT-GGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTT 289286 || | ||| |||||| || | || || || ||||| |||| || ||||| |||| Sbjct 253102 AACA-AACACCCTTTAGGAATCTTAGCACCTAAAGCAG---TATACTTATCAGGATTCTT 253047 Query 289287 TAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGC 289346 || || || |||| ||| | | ||| || || | |||| ||| || |||||| | Sbjct 253046 CAAGAAATCAACAACTTCTTGTAACTCAAGCTTAGCTTGATCAGCTCCAGCAACATCACC 252987 Query 289347 AAAAGT 289352 ||| || Sbjct 252986 AAACGT 252981 >seq945 Length=941802 Score = 96.9 bits (106), Expect = 1e-14 Identities = 280/418 (67%), Gaps = 20/418 (5%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| || || | ||||||| || ||||| || ||||||||| || Sbjct 882099 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCTCC 882158 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAA 289056 || || || | |||||| | | | |||||||| ||||| || |||||||| Sbjct 882159 TCC-----CATCCCA---GCTCCTCTCTGCCTCCCAACAGCGTCAATCTCATCAATGAAT 882210 Query 289057 ATCACACACGGAGAATTTTGTCTC-GCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 | | ||| || | ||| | || || | | || || || || || | ||||| || Sbjct 882211 ACAATACAAGGTGC-TTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACC 882269 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTG 289174 | ||||||| | | || ||||| || || || | | || | ||| | ||| || Sbjct 882270 CACACCAACAAAAAGCTCCACAAACTCTGAGGCCGCG-CAAGAGAAGAACGGTACTCCTG 882328 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 | || || || || ||||| ||||| ||||||||||| || ||||| ||||| | || Sbjct 882329 CCTCCCCAGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGCGGTCCAAC-AAGC 882387 Query 289235 GAACTCCCTTT-GGTACTTTTGC-CCCAGCAGACT-TATATTTCTCAGGGCTCTTTAAAA 289291 ||| |||||| || | || || |||| || || | || || ||||| |||| || | Sbjct 882388 AAACACCCTTTAGGAATCTTAGCACCCA--AGGCTGTGTACTTATCAGGATTCTTCAAGA 882445 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 | || |||| ||||| | || | || || | |||| || || ||||| || || Sbjct 882446 AATCCACAACTTCCTGTAACTCCAACTTAGCTTGATCAGCACCAGCAACATCTGCGAA 882503 >seq894 Length=3336090 Score = 95.1 bits (104), Expect = 4e-14 Identities = 304/468 (65%), Gaps = 14/468 (3%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 || || |||||||| ||||| |||| ||| | || | | | || ||| |||||| Sbjct 2654783 ATGTCTGCTCTGTTGGTTGCAGCCACTACGATAACACCAGTGTTACCCTCAAAACCATCC 2654842 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008 || || | | |||||||| || ||||| ||||||||||| ||||| || Sbjct 2654843 ATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATT---ACCTC------CA 2654893 Query 289009 CCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || | || | |||| ||| ||||||||||||| ||||| || | ||||| | || Sbjct 2654894 CCA-ATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACAATGCA 2654952 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 |||| ||||| | | || || || | || | || | || || |||| ||| || Sbjct 2654953 TGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACTCTTGAGGCACCAACACCGAC 2655012 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGC 289184 | |||| || ||||| |||||| | || | || ||| | ||| ||||| || || Sbjct 2655013 AAACATCTCAACAAACTCAGAACCCGAGATGGAAAAGAAGGGCACACCGGCTTCACCAGC 2655072 Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244 | || | ||||| || || || || || ||||| || || | | ||||| || || Sbjct 2655073 AATGGCTTTTGCCAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAACACCTTT 2655132 Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304 || | || ||| | | | | ||||||| |||| | ||| || || | ||| Sbjct 2655133 GGGGATCCGGGCACCAACTGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 2655192 Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | | || | || || || || ||| || |||||| ||||||| Sbjct 2655193 CATGAAATCCTGCTTGGCTTCGTCGACTCCAGCAACATCATCAAAAGT 2655240 >seq1873 Length=528355 Score = 86.0 bits (94), Expect = 2e-11 Identities = 118/164 (72%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 233259 TTAAAAATGT-TGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGC 233317 || |||| || || |||||| ||||||||||| ||||| ||||||||||| |||| ||| Sbjct 210652 TTCAAAAAGTGTGCAGCACCATGAGCAATCATGCAATCGCGTTCCATTTCTCCAAAACGG 210711 Query 233318 AGACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCC 233377 |||||||||||| || | || | ||| ||| | ||||| | ||||| Sbjct 210712 AGACCACCATCACGGGATCGCCCTTCAGCTGGTTGTCTTGTTAAGATTTGCACAGGACCT 210771 Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCT 233421 | |||| | | ||| || || | |||||||||||||| ||| Sbjct 210772 CGTCCACGGGAGTGAATCTTGTCATCAACCATATGCTTCAATCT 210815 >seq854 Length=1847798 Score = 84.2 bits (92), Expect = 6e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 1109051 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 1109110 Query 409011 TAGAACAttttttt 409024 || ||||||||| Sbjct 1109111 GGGAGCATTTTTTT 1109124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471775377692543