Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1180 120 9e-22
seq772 120 9e-22
seq945 96.9 1e-14
seq894 95.1 4e-14
seq1873 86.0 2e-11
seq854 84.2 6e-11
>seq1180
Length=4302264
Score = 120 bits (132), Expect = 9e-22
Identities = 278/412 (67%), Gaps = 18/412 (4%)
Strand=Plus/Minus
Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997
|||| || ||||| |||||||| || || ||||| || || | ||| || ||| |
Sbjct 1160764 TAAACCCGTCCATTTCAGTTAAAATCTGGTTTAGTGTCTGCTCACGTTCGTCGTTTCCTC 1160705
Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057
||| | | ||| || ||| | || | |||||||||||||| || |||||||| |
Sbjct 1160704 CTCCTATA----CCGGTTC-CTC-TCATTCTCCCAACAGCATCAATCTCATCAATGAACA 1160651
Query 289058 TCACACACGGAGAAT-----TTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112
| ||| || |||| |||| || | ||| || || ||||| || | |||||
Sbjct 1160650 CTATACAAGGTGAATTAGCCTTTGCCTTG---TTG--AACAAGTCTCTAACCCTAGATGC 1160596
Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172
||| | ||||||| |||| |||| || || || |||| | | | || | |||
Sbjct 1160595 TCCTACACCAACAAACATCTCTATGAACTCCGATCCGGACAATGAGAAAAACGGAACACC 1160536
Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232
||||| || |||| ||| | |||| || ||||| || ||||| |||||||| ||
Sbjct 1160535 GGCTTCTCCAGCTATAGCCTTGGCCAACAGAGTCTTTCCGGTTCCCGGTGGTCCAGTCAA 1160476
Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAA 289291
| || || ||||| | ||| ||||| || || | ||||||| ||| | || || |
Sbjct 1160475 CAAGACGCCTTTTGGGATTTTAGCCCC-CAAGGCTGAGAATTTCTCTGGGGTTTTCAAGA 1160417
Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343
|||| || || || || | || | || || || || ||||||||||||
Sbjct 1160416 ATTCAACGATCTCTTCGAAGTCTTGCTTGGCTTCGTCTACTCCTGCTACATC 1160365
>seq772
Length=329654
Score = 120 bits (132), Expect = 9e-22
Identities = 360/546 (66%), Gaps = 26/546 (5%)
Strand=Plus/Minus
Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876
|||| |||||||||| | |||| || || ||||| ||||||| | |||
Sbjct 253510 CCAGCTACATCAGGCCTATCCACTGTGACTTGCCGGTCAAATCTACCAGGTCTCAGCAAT 253451
Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAA---CAATAGATTCGGTT 288933
|| | ||| | | ||| | ||| || ||||| ||||| |||| || ||| | |
Sbjct 253450 GCGGAGTCAAGAACATCCGGTCTATTGGTTGCAGCCAACACAATGACACCAGAAT---TA 253394
Query 288934 TGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993
||| |||||||| || |||| ||||||| || ||||| || |||||||||
Sbjct 253393 CCAGAAAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTT 253334
Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAA 289051
||| | || || | |||||| ||| |||| ||||||||||| || ||||
Sbjct 253333 CCACCACC-----CATCCCA---GCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAA 253282
Query 289052 TGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATG 289111
| || | | ||| |||| || | |||| | |||| || || || || | || |
Sbjct 253281 TAAACACAATACAAGGAGCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAG 253222
Query 289112 CTCCAAGACCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTACA 289170
| || | ||||||| | | || ||||| || ||||| | | || || ||| | ||
Sbjct 253221 CACCCACACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACAC-GAAAAGAACGGCACT 253163
Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230
|||||| || || || || || |||| ||| ||||| || || || ||||| || |
Sbjct 253162 CCTGCTTCTCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGGTGGACCAACC 253103
Query 289231 AATAGAACTCCCTTT-GGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTT 289286
|| | ||| |||||| || | || || || ||||| |||| || ||||| ||||
Sbjct 253102 AACA-AACACCCTTTAGGAATCTTAGCACCTAAAGCAG---TATACTTATCAGGATTCTT 253047
Query 289287 TAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGC 289346
|| || || |||| ||| | | ||| || || | |||| ||| || |||||| |
Sbjct 253046 CAAGAAATCAACAACTTCTTGTAACTCAAGCTTAGCTTGATCAGCTCCAGCAACATCACC 252987
Query 289347 AAAAGT 289352
||| ||
Sbjct 252986 AAACGT 252981
>seq945
Length=941802
Score = 96.9 bits (106), Expect = 1e-14
Identities = 280/418 (67%), Gaps = 20/418 (5%)
Strand=Plus/Plus
Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998
|||||||||||| || || | ||||||| || ||||| || ||||||||| ||
Sbjct 882099 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCTCC 882158
Query 288999 TCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAA 289056
|| || || | |||||| | | | |||||||| ||||| || ||||||||
Sbjct 882159 TCC-----CATCCCA---GCTCCTCTCTGCCTCCCAACAGCGTCAATCTCATCAATGAAT 882210
Query 289057 ATCACACACGGAGAATTTTGTCTC-GCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115
| | ||| || | ||| | || || | | || || || || || | ||||| ||
Sbjct 882211 ACAATACAAGGTGC-TTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACC 882269
Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTG 289174
| ||||||| | | || ||||| || || || | | || | ||| | ||| ||
Sbjct 882270 CACACCAACAAAAAGCTCCACAAACTCTGAGGCCGCG-CAAGAGAAGAACGGTACTCCTG 882328
Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234
| || || || || ||||| ||||| ||||||||||| || ||||| ||||| | ||
Sbjct 882329 CCTCCCCAGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGCGGTCCAAC-AAGC 882387
Query 289235 GAACTCCCTTT-GGTACTTTTGC-CCCAGCAGACT-TATATTTCTCAGGGCTCTTTAAAA 289291
||| |||||| || | || || |||| || || | || || ||||| |||| || |
Sbjct 882388 AAACACCCTTTAGGAATCTTAGCACCCA--AGGCTGTGTACTTATCAGGATTCTTCAAGA 882445
Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349
| || |||| ||||| | || | || || | |||| || || ||||| || ||
Sbjct 882446 AATCCACAACTTCCTGTAACTCCAACTTAGCTTGATCAGCACCAGCAACATCTGCGAA 882503
>seq894
Length=3336090
Score = 95.1 bits (104), Expect = 4e-14
Identities = 304/468 (65%), Gaps = 14/468 (3%)
Strand=Plus/Plus
Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948
|| || |||||||| ||||| |||| ||| | || | | | || ||| ||||||
Sbjct 2654783 ATGTCTGCTCTGTTGGTTGCAGCCACTACGATAACACCAGTGTTACCCTCAAAACCATCC 2654842
Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008
|| || | | |||||||| || ||||| ||||||||||| ||||| ||
Sbjct 2654843 ATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATT---ACCTC------CA 2654893
Query 289009 CCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064
|| | || | |||| ||| ||||||||||||| ||||| || | ||||| | ||
Sbjct 2654894 CCA-ATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACAATGCA 2654952
Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124
|||| ||||| | | || || || | || | || | || || |||| ||| ||
Sbjct 2654953 TGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACTCTTGAGGCACCAACACCGAC 2655012
Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGC 289184
| |||| || ||||| |||||| | || | || ||| | ||| ||||| || ||
Sbjct 2655013 AAACATCTCAACAAACTCAGAACCCGAGATGGAAAAGAAGGGCACACCGGCTTCACCAGC 2655072
Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244
| || | ||||| || || || || || ||||| || || | | ||||| || ||
Sbjct 2655073 AATGGCTTTTGCCAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAACACCTTT 2655132
Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304
|| | || ||| | | | | ||||||| |||| | ||| || || | |||
Sbjct 2655133 GGGGATCCGGGCACCAACTGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 2655192
Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
| | || | || || || || ||| || |||||| |||||||
Sbjct 2655193 CATGAAATCCTGCTTGGCTTCGTCGACTCCAGCAACATCATCAAAAGT 2655240
>seq1873
Length=528355
Score = 86.0 bits (94), Expect = 2e-11
Identities = 118/164 (72%), Gaps = 1/164 (1%)
Strand=Plus/Plus
Query 233259 TTAAAAATGT-TGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGC 233317
|| |||| || || |||||| ||||||||||| ||||| ||||||||||| |||| |||
Sbjct 210652 TTCAAAAAGTGTGCAGCACCATGAGCAATCATGCAATCGCGTTCCATTTCTCCAAAACGG 210711
Query 233318 AGACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCC 233377
|||||||||||| || | || | ||| ||| | ||||| | |||||
Sbjct 210712 AGACCACCATCACGGGATCGCCCTTCAGCTGGTTGTCTTGTTAAGATTTGCACAGGACCT 210771
Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCT 233421
| |||| | | ||| || || | |||||||||||||| |||
Sbjct 210772 CGTCCACGGGAGTGAATCTTGTCATCAACCATATGCTTCAATCT 210815
>seq854
Length=1847798
Score = 84.2 bits (92), Expect = 6e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010
|| ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| |
Sbjct 1109051 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 1109110
Query 409011 TAGAACAttttttt 409024
|| |||||||||
Sbjct 1109111 GGGAGCATTTTTTT 1109124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471775377692543
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |