Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_021530.1
Length=171407
Score E
Sequences producing significant alignments: (Bits) Value
seq1127 129 6e-25
seq1027 96.9 4e-15
>seq1127
Length=645582
Score = 129 bits (142), Expect = 6e-25
Identities = 140/186 (75%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809
||| |||| ||||| || || ||||| ||| | ||| | |||||||| |||||||||
Sbjct 574033 TACGTTCTTGACGCGGCCGAGGAAGCTGGAATCGATTTGCCATACTCTTGCCGTGCTGGT 573974
Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869
|||| || ||||| |||||| |||| |||||| ||||||||||| ||| ||
Sbjct 573973 TCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGATCAGTCTGACCAAAGT 573914
Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929
||| | || ||||| ||||||| | ||| |||||||| || |||| || ||||| ||
Sbjct 573913 TTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTGTGCTGCTTATCCTACT 573854
Query 158930 TCTGAT 158935
||||||
Sbjct 573853 TCTGAT 573848
>seq1027
Length=9901
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 158708 ACTCCTGAGGGAGAAACTGTCGTCCAATGTGAAGAGGATCAATACATTCTAGACGCAGCA 158767
|| |||||||||||| | || | |||||||| ||| ||| | || ||||| ||
Sbjct 6535 ACACCTGAGGGAGAACAAGAAGTGGAGTGTGAAGAAGATGTCTACGTCCTCGACGCTGCT 6594
Query 158768 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCA 158827
|| ||||| ||| | || | ||||| || ||||| ||| ||||||| || ||
Sbjct 6595 GAGGAAGCCGGAATCGACTTGCCGTACTCATGCCGTGCCGGTTCTTGCTCAAGTTGCGCC 6654
Query 158828 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCGTTCTTAGACGATGATCAG 158887
|| ||| | || ||||| | |||| ||| || ||| |||||||||||||| |||
Sbjct 6655 GGGAAAGTCGTCTCTGGCTCCATTGACCAGTCGGAACAGAGCTTCTTAGACGATGACCAG 6714
Query 158888 ATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACATCTGAT 158935
|| | ||| | ||| | || ||||| || ||||| || ||||||
Sbjct 6715 ATGAGCGAAGGCTATGTCTTGACCTGTGTGGCTTATCCGACTTCTGAT 6762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548359052371480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |