Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq1127 129 6e-25 seq1027 96.9 4e-15 >seq1127 Length=645582 Score = 129 bits (142), Expect = 6e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||| |||| ||||| || || ||||| ||| | ||| | |||||||| ||||||||| Sbjct 574033 TACGTTCTTGACGCGGCCGAGGAAGCTGGAATCGATTTGCCATACTCTTGCCGTGCTGGT 573974 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 |||| || ||||| |||||| |||| |||||| ||||||||||| ||| || Sbjct 573973 TCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGATCAGTCTGACCAAAGT 573914 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 ||| | || ||||| ||||||| | ||| |||||||| || |||| || ||||| || Sbjct 573913 TTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTGTGCTGCTTATCCTACT 573854 Query 158930 TCTGAT 158935 |||||| Sbjct 573853 TCTGAT 573848 >seq1027 Length=9901 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 158708 ACTCCTGAGGGAGAAACTGTCGTCCAATGTGAAGAGGATCAATACATTCTAGACGCAGCA 158767 || |||||||||||| | || | |||||||| ||| ||| | || ||||| || Sbjct 6535 ACACCTGAGGGAGAACAAGAAGTGGAGTGTGAAGAAGATGTCTACGTCCTCGACGCTGCT 6594 Query 158768 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCA 158827 || ||||| ||| | || | ||||| || ||||| ||| ||||||| || || Sbjct 6595 GAGGAAGCCGGAATCGACTTGCCGTACTCATGCCGTGCCGGTTCTTGCTCAAGTTGCGCC 6654 Query 158828 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCGTTCTTAGACGATGATCAG 158887 || ||| | || ||||| | |||| ||| || ||| |||||||||||||| ||| Sbjct 6655 GGGAAAGTCGTCTCTGGCTCCATTGACCAGTCGGAACAGAGCTTCTTAGACGATGACCAG 6714 Query 158888 ATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACATCTGAT 158935 || | ||| | ||| | || ||||| || ||||| || |||||| Sbjct 6715 ATGAGCGAAGGCTATGTCTTGACCTGTGTGGCTTATCCGACTTCTGAT 6762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548359052371480