Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_021536.1
Length=171797
Score E
Sequences producing significant alignments: (Bits) Value
seq1127 122 1e-22
seq1257 98.7 1e-15
>seq1127
Length=645582
Score = 122 bits (134), Expect = 1e-22
Identities = 151/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 151989 TGTGAAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTAC 152048
||||| || ||| ||| | | || || || |||||| ||| | ||| || |||
Sbjct 574048 TGTGACGACGACGTTTACGTTCTTGACGCGGCCGAGGAAGCTGGAATCGATTTGCCATAC 573989
Query 152049 TCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGAT 152108
||||| ||||||||| | ||||| ||||||||||| ||||| ||| | ||||||
Sbjct 573988 TCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGAT 573929
Query 152109 CAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGT 152168
||| ||||||| ||| | |||||||| ||||||| ||| || || || || |||
Sbjct 573928 CAGTCTGACCAAAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTGT 573869
Query 152169 GTTGCATATCCAACTTCTGATGTCACC 152195
| ||| ||||| ||||||||||| |||
Sbjct 573868 GCTGCTTATCCTACTTCTGATGTTACC 573842
>seq1257
Length=180379
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 151993 AAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTT 152052
|||||||||| |||||||||||||| ||||| || ||||||||| || |||||||
Sbjct 164592 AAGATGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTCTT 164651
Query 152053 GTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAG 152111
| | |||||||| |||||| |||| || ||| |||||||| || | ||||| |||
Sbjct 164652 GCAGAGCTGGTGCGTGTTCCACTTGCGCGGGTCAGATTGTGTCGGGCAACGTTGACCAG 164710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 549607017443080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |