Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq1127 122 1e-22 seq1257 98.7 1e-15 >seq1127 Length=645582 Score = 122 bits (134), Expect = 1e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 151989 TGTGAAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTAC 152048 ||||| || ||| ||| | | || || || |||||| ||| | ||| || ||| Sbjct 574048 TGTGACGACGACGTTTACGTTCTTGACGCGGCCGAGGAAGCTGGAATCGATTTGCCATAC 573989 Query 152049 TCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGAT 152108 ||||| ||||||||| | ||||| ||||||||||| ||||| ||| | |||||| Sbjct 573988 TCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGAT 573929 Query 152109 CAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGT 152168 ||| ||||||| ||| | |||||||| ||||||| ||| || || || || ||| Sbjct 573928 CAGTCTGACCAAAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTGT 573869 Query 152169 GTTGCATATCCAACTTCTGATGTCACC 152195 | ||| ||||| ||||||||||| ||| Sbjct 573868 GCTGCTTATCCTACTTCTGATGTTACC 573842 >seq1257 Length=180379 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 151993 AAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTT 152052 |||||||||| |||||||||||||| ||||| || ||||||||| || ||||||| Sbjct 164592 AAGATGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTCTT 164651 Query 152053 GTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAG 152111 | | |||||||| |||||| |||| || ||| |||||||| || | ||||| ||| Sbjct 164652 GCAGAGCTGGTGCGTGTTCCACTTGCGCGGGTCAGATTGTGTCGGGCAACGTTGACCAG 164710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549607017443080