Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq415 138 1e-26
seq1432 129 7e-24
>seq415
Length=609146
Score = 138 bits (152), Expect = 1e-26
Identities = 216/302 (72%), Gaps = 8/302 (3%)
Strand=Plus/Plus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
|||| |||||||| || || ||||||||||| ||||| || || | | |||| | ||||
Sbjct 100888 CCGAATGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTT 100947
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
| || || |||||| || || || ||||| ||||| |||||| |||||||
Sbjct 100948 GAACATCGGACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGA 101007
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGT 869807
| ||||| ||||| || ||||| ||||| || || ||||| |||| ||||||
Sbjct 101008 AGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAGT 101067
Query 869808 GGACGGTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTT 869866
| | |||| | | | || || || || || |||||||||| || || ||||| |||
Sbjct 101068 CGCGGTTGTCTTGTGAT-AGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTT 101126
Query 869867 TTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGT 869924
|||||||| ||||| | || ||||| | || ||||| | ||| || | || ||||||
Sbjct 101127 TTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACA-TACAGAATCTGTCTGGGGT 101185
Query 869925 TG 869926
||
Sbjct 101186 TG 101187
>seq1432
Length=495105
Score = 129 bits (142), Expect = 7e-24
Identities = 194/275 (71%), Gaps = 3/275 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|| || || |||||||| ||||| ||||| ||||| ||||| | | |||| || ||
Sbjct 65773 GAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTGA 65714
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || |||||| || | || |||||| ||||| ||||| ||||||||
Sbjct 65713 ACATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGAAG 65654
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACA---CCCAGTGG 869809
|| || |||||||| ||||| ||||| || ||||||| | | || || |||||| |
Sbjct 65653 AAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAGTCG 65594
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
|||| ||| || || || ||||||||||||| || || ||||| || |||
Sbjct 65593 CGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCTTG 65534
Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904
||||||||||| | || |||| |||| |||||
Sbjct 65533 TACATCTCCCAGATCTGTGGGTATTGGATTGGGAA 65499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106955457174763
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |