Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq415 138 1e-26 seq1432 129 7e-24 >seq415 Length=609146 Score = 138 bits (152), Expect = 1e-26 Identities = 216/302 (72%), Gaps = 8/302 (3%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| |||||||| || || ||||||||||| ||||| || || | | |||| | |||| Sbjct 100888 CCGAATGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTT 100947 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || |||||| || || || ||||| ||||| |||||| ||||||| Sbjct 100948 GAACATCGGACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGA 101007 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGT 869807 | ||||| ||||| || ||||| ||||| || || ||||| |||| |||||| Sbjct 101008 AGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAGT 101067 Query 869808 GGACGGTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTT 869866 | | |||| | | | || || || || || |||||||||| || || ||||| ||| Sbjct 101068 CGCGGTTGTCTTGTGAT-AGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTT 101126 Query 869867 TTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGT 869924 |||||||| ||||| | || ||||| | || ||||| | ||| || | || |||||| Sbjct 101127 TTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACA-TACAGAATCTGTCTGGGGT 101185 Query 869925 TG 869926 || Sbjct 101186 TG 101187 >seq1432 Length=495105 Score = 129 bits (142), Expect = 7e-24 Identities = 194/275 (71%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || || || |||||||| ||||| ||||| ||||| ||||| | | |||| || || Sbjct 65773 GAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTGA 65714 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| || | || |||||| ||||| ||||| |||||||| Sbjct 65713 ACATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGAAG 65654 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACA---CCCAGTGG 869809 || || |||||||| ||||| ||||| || ||||||| | | || || |||||| | Sbjct 65653 AAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAGTCG 65594 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 |||| ||| || || || ||||||||||||| || || ||||| || ||| Sbjct 65593 CGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCTTG 65534 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||||||||||| | || |||| |||| ||||| Sbjct 65533 TACATCTCCCAGATCTGTGGGTATTGGATTGGGAA 65499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106955457174763