Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1432 136 6e-26 >seq1432 Length=495105 Score = 136 bits (150), Expect = 6e-26 Identities = 152/201 (76%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| |||||| Sbjct 65677 ACGATTCCGTCTGATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCG 65618 Query 796261 TCGCTGAGCGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 | | | || ||| |||||| | |||| ||| ||||| || ||||||||| Sbjct 65617 TTGGTTAGTGAGTTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTC 65558 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAAC 796377 || ||||| || ||||| || |||||||||||||| ||| || |||| |||| |||||| Sbjct 65557 CAGAAGGACGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAAC 65498 Query 796378 AGAACAAAGCGAT-TGGGGTT 796397 | | || |||| ||| ||| Sbjct 65497 ATACAGAATCGATCTGGTGTT 65477 Score = 118 bits (130), Expect = 2e-20 Identities = 222/325 (68%), Gaps = 6/325 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| | ||||||||||| || ||| || ||||| | || || || Sbjct 66053 ACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACCTCGTTT 65994 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| | ||| || || | ||| || || || ||||| || || || || ||| ||||| Sbjct 65993 CTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCAAGCAAA 65934 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | |||| | ||| || || | | || || ||||||||| ||||| ||||| Sbjct 65933 AGCTACGATTCTCTCAGCGAAGCTTTG-AGATCC-----GTTGATCCATTTCATTGCCCA 65880 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 ||||| || ||| |||| | || | || ||||| ||||||||||| || || |||| Sbjct 65879 TTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAAGAGATGATCTCTCTC 65820 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 ||| |||| ||| ||||||| ||||| || |||| || || || || || Sbjct 65819 TTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGAATGAATATTCTC 65760 Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664 ||| ||||| ||||| || || ||| Sbjct 65759 GATTGCGATTTGGAATCCGTAGAAG 65735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916008227357921