Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 136 6e-26
>seq1432
Length=495105
Score = 136 bits (150), Expect = 6e-26
Identities = 152/201 (76%), Gaps = 4/201 (2%)
Strand=Plus/Minus
Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260
||||| ||||| |||||||| |||||||||||||| ||||| |||||||| ||||||
Sbjct 65677 ACGATTCCGTCTGATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCG 65618
Query 796261 TCGCTGAGCGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317
| | | || ||| |||||| | |||| ||| ||||| || |||||||||
Sbjct 65617 TTGGTTAGTGAGTTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTC 65558
Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAAC 796377
|| ||||| || ||||| || |||||||||||||| ||| || |||| |||| ||||||
Sbjct 65557 CAGAAGGACGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAAC 65498
Query 796378 AGAACAAAGCGAT-TGGGGTT 796397
| | || |||| ||| |||
Sbjct 65497 ATACAGAATCGATCTGGTGTT 65477
Score = 118 bits (130), Expect = 2e-20
Identities = 222/325 (68%), Gaps = 6/325 (2%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||||||||| | ||||||||||| || ||| || ||||| | || || ||
Sbjct 66053 ACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACCTCGTTT 65994
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||| | ||| || || | ||| || || || ||||| || || || || ||| |||||
Sbjct 65993 CTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCAAGCAAA 65934
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| |||| | ||| || || | | || || ||||||||| ||||| |||||
Sbjct 65933 AGCTACGATTCTCTCAGCGAAGCTTTG-AGATCC-----GTTGATCCATTTCATTGCCCA 65880
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579
||||| || ||| |||| | || | || ||||| ||||||||||| || || ||||
Sbjct 65879 TTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAAGAGATGATCTCTCTC 65820
Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639
||| |||| ||| ||||||| ||||| || |||| || || || || ||
Sbjct 65819 TTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGAATGAATATTCTC 65760
Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664
||| ||||| ||||| || || |||
Sbjct 65759 GATTGCGATTTGGAATCCGTAGAAG 65735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916008227357921
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |