Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1780 105 1e-17 seq1013 93.3 7e-14 seq912 86.0 1e-11 seq443 84.2 3e-11 >seq1780 Length=424430 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||| | || || | || || ||||| ||||| | || || || | | Sbjct 97683 TGCAGATATTCGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCAG 97624 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || ||| ||| || ||| || ||||| || || || ||||||| Sbjct 97623 ACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAAC 97564 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || || || |||||||| | || ||| | ||||| | ||||||| || | Sbjct 97563 AGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAACGCTTGCAGATTACAACA 97504 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | || | || | ||||| |||| Sbjct 97503 TCCAAAAAGAATCAACTCTCCATCTCGTGCTTCGTCTGAGAGGTGGTA 97456 >seq1013 Length=1118043 Score = 93.3 bits (102), Expect = 7e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | ||||| |||| || || ||||| || | || || ||| ||| | Sbjct 384834 TGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTTGAATCATCA- 384776 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| ||| || || ||| || ||||| || ||||| ||||| Sbjct 384775 GACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATCCCACCGGATCAG 384716 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | || || || || |||||||| || || ||||| | | ||||| || Sbjct 384715 CAACGGTTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCTGATTACAAC 384656 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || || ||||||||||| | ||||| || |||| | ||||||||| Sbjct 384655 ATCCAGAAAGAATCGACGCTTCATTTGGTGCTACGTCTGAGAGGAGGT 384608 >seq912 Length=1276171 Score = 86.0 bits (94), Expect = 1e-11 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| || | || || | || || |||||||| ||| | || || || | | | Sbjct 751387 TGCAAATCTTTGTGAAGACTCTCACGGGTAAAACAATCACTCTAGAGGTTGAGAGCTCA- 751445 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| ||| ||| || || |||||| || || ||||| || || Sbjct 751446 GACACCATTGACAATGTCAAAGCTAAGATTCAGGATAAAGAGGGAATCCCACCGGACCAG 751505 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || || || ||||||||||| || |||| ||| | | || | | || || || Sbjct 751506 CAGAGGCTTATCTTTGCAGGTAAGCAGCTAGAGGATGGTCGCACACTGGCTGACTACAAC 751565 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || |||||||| || || ||||||| || | || | ||||| |||| Sbjct 751566 ATCCAAAAAGAGTCAACCCTCCATTTGGTGCTTCGTCTCAGAGGTGGTA 751614 >seq443 Length=3098630 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| || ||| Sbjct 1849464 AAAGAGGGTATTCCACCTGATCAACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAAGAT 1849523 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATT 146242 | || ||| | ||||| || || || ||||| || ||| | ||| | || || Sbjct 1849524 GGCCGGACCTTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 1849579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786144397167880