Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq1780 105 1e-17
seq1013 93.3 7e-14
seq912 86.0 1e-11
seq443 84.2 3e-11
>seq1780
Length=424430
Score = 105 bits (116), Expect = 1e-17
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| |||||| | || || | || || ||||| ||||| | || || || | |
Sbjct 97683 TGCAGATATTCGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCAG 97624
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | || || ||| ||| || ||| || ||||| || || || |||||||
Sbjct 97623 ACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAAC 97564
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| ||||| || || || |||||||| | || ||| | ||||| | ||||||| || |
Sbjct 97563 AGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAACGCTTGCAGATTACAACA 97504
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
| ||||||||||| ||| ||||| | || | || | ||||| ||||
Sbjct 97503 TCCAAAAAGAATCAACTCTCCATCTCGTGCTTCGTCTGAGAGGTGGTA 97456
>seq1013
Length=1118043
Score = 93.3 bits (102), Expect = 7e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090
|||| || ||| | ||||| |||| || || ||||| || | || || ||| ||| |
Sbjct 384834 TGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTTGAATCATCA- 384776
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
|| || || | ||||| ||| || || ||| || ||||| || ||||| |||||
Sbjct 384775 GACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATCCCACCGGATCAG 384716
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
||| | | || || || || |||||||| || || ||||| | | ||||| ||
Sbjct 384715 CAACGGTTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCTGATTACAAC 384656
Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258
|| || ||||||||||| | ||||| || |||| | |||||||||
Sbjct 384655 ATCCAGAAAGAATCGACGCTTCATTTGGTGCTACGTCTGAGAGGAGGT 384608
>seq912
Length=1276171
Score = 86.0 bits (94), Expect = 1e-11
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090
||||||| || | || || | || || |||||||| ||| | || || || | | |
Sbjct 751387 TGCAAATCTTTGTGAAGACTCTCACGGGTAAAACAATCACTCTAGAGGTTGAGAGCTCA- 751445
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
|| || ||| | ||||| ||| ||| || || |||||| || || ||||| || ||
Sbjct 751446 GACACCATTGACAATGTCAAAGCTAAGATTCAGGATAAAGAGGGAATCCCACCGGACCAG 751505
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
|| || || || ||||||||||| || |||| ||| | | || | | || || ||
Sbjct 751506 CAGAGGCTTATCTTTGCAGGTAAGCAGCTAGAGGATGGTCGCACACTGGCTGACTACAAC 751565
Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
|| |||||||| || || ||||||| || | || | ||||| ||||
Sbjct 751566 ATCCAAAAAGAGTCAACCCTCCATTTGGTGCTTCGTCTCAGAGGTGGTA 751614
>seq443
Length=3098630
Score = 84.2 bits (92), Expect = 3e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186
||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| || |||
Sbjct 1849464 AAAGAGGGTATTCCACCTGATCAACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAAGAT 1849523
Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATT 146242
| || ||| | ||||| || || || ||||| || ||| | ||| | || ||
Sbjct 1849524 GGCCGGACCTTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 1849579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786144397167880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |