Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq1127 127 2e-24 seq1027 91.5 2e-13 >seq1127 Length=645582 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 158205 AGTGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACT 158264 ||||||| || || ||| |||| ||||| || || ||||| ||| | ||| | | Sbjct 574050 AGTGTGACGACGACGTTTACGTTCTTGACGCGGCCGAGGAAGCTGGAATCGATTTGCCAT 573991 Query 158265 ACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTG 158324 ||||||| ||||||||| |||| || ||||| |||||| |||| |||||| |||||| Sbjct 573990 ACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTG 573931 Query 158325 ATCAGAGTGATCAGTCGTTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTACGT 158384 ||||| ||| || ||||| || ||||| || || | | ||| |||||||| || | Sbjct 573930 ATCAGTCTGACCAAAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTT 573871 Query 158385 GTGTAGCATATCCAACATCTGAT 158407 ||| || ||||| || |||||| Sbjct 573870 GTGCTGCTTATCCTACTTCTGAT 573848 >seq1027 Length=9901 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 158180 ACTCCTGAGGGAGAAACAGTTATCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 158239 || |||||||||||| || | |||||||||| ||| ||| | || ||||| || Sbjct 6535 ACACCTGAGGGAGAACAAGAAGTGGAGTGTGAAGAAGATGTCTACGTCCTCGACGCTGCT 6594 Query 158240 GAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCA 158299 || ||||| ||| | || | ||||| || ||||| ||| ||||||| || || Sbjct 6595 GAGGAAGCCGGAATCGACTTGCCGTACTCATGCCGTGCCGGTTCTTGCTCAAGTTGCGCC 6654 Query 158300 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCGTTCCTAGACGATGATCAA 158359 || ||| | || ||||| | |||| ||| || ||| ||| |||||||||| || Sbjct 6655 GGGAAAGTCGTCTCTGGCTCCATTGACCAGTCGGAACAGAGCTTCTTAGACGATGACCAG 6714 Query 158360 ATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACATCTGAT 158407 || | ||| | ||| | || ||||| || ||||| || |||||| Sbjct 6715 ATGAGCGAAGGCTATGTCTTGACCTGTGTGGCTTATCCGACTTCTGAT 6762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545258339155120