Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_023587.1
Length=189311
Score E
Sequences producing significant alignments: (Bits) Value
seq1127 140 4e-28
>seq1127
Length=645582
Score = 140 bits (154), Expect = 4e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597
||| | ||||| || || || ||||| || || ||| | || ||||| || |||||||||
Sbjct 574033 TACGTTCTTGACGCGGCCGAGGAAGCTGGAATCGATTTGCCATACTCTTGCCGTGCTGGT 573974
Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657
| ||||| | ||||||||||||| | || ||| |||| |||||||||||||| |
Sbjct 573973 TCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGATCAGTCTGACCAAAGT 573914
Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717
|||||||||||||| || |||| | ||| ||| | | ||||| | || || || ||
Sbjct 573913 TTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTGTGCTGCTTATCCTACT 573854
Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGA 138752
|| ||| || ||||||||| | ||||| || ||
Sbjct 573853 TCTGATGTTACCATTGAAACTCACAAAGAAGAAGA 573819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605650248889240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |