Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq1013 104 2e-17
seq507 104 2e-17
seq713 91.5 1e-13
seq530 91.5 1e-13
seq980 86.0 6e-12
seq1780 84.2 2e-11
seq687 84.2 2e-11
>seq1013
Length=1118043
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||||| | ||| | || ||||||| || |||||||| || |||||||||||
Sbjct 384609 CCTCCTCTCAGACGTAGCACCAAATGAAGCGTCGATTCTTTCTGGATGTTGTAATCAGCG 384668
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| ||| || |||||| | |||||| || || |||||| ||||||||||| || ||
Sbjct 384669 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 384728
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| ||||| ||| || ||| | | || | ||||||| | ||| ||
Sbjct 384729 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCAACC 384788
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | || | ||||| || || | ||||| ||||| || |||||
Sbjct 384789 TCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 384835
>seq507
Length=413332
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| |||| |||||| | ||| || || | || |||||||| || |||||||||||| |
Sbjct 378517 CCACCTCTTAAACGAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCGGCC 378458
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || | || || || ||||| |||||| |||| || | |||||| || |||||
Sbjct 378457 AAAGTACGACCATCCTCAAGCTGTTTCCCAGCAAAGATAAGTCTTTGCTGGTCAGGAGGA 378398
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| ||||| || ||| || | | || | ||||| | | || ||
Sbjct 378397 ATACCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACC 378338
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | ||| | |||||||| || | |||||| ||||| ||||||||
Sbjct 378337 TCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 378291
Score = 86.0 bits (94), Expect = 6e-12
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | ||| | || | ||| | |||||| || ||||| ||||||||||| | |
Sbjct 378973 CCACCACGGAGACGAAGCACAAGATGGAGTGTAGACTCCTTTTGGATGTTGTAATC-CGC 378915
Query 137245 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302
| ||| ||| ||||| || ||||| ||||| |||| || | ||||| || || |
Sbjct 378914 AA-GTGTCCGACCATCTTCAAGCTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCCGGTG 378856
Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362
| || ||||| ||||| ||| || || | | || | |||||||| | || |
Sbjct 378855 GGATCCCTTCCTTGTCTTGAATCTTAGCCTTGACATTATCAATCGTGTCTGAGCTCTCAA 378796
Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
| || | ||| | ||||||||||| | || || ||||| || ||||||
Sbjct 378795 CCTCCAAAGTGATGGTCTTGCCGGTAAGGGTCTTCACGAAAATCTGCATA 378746
>seq713
Length=176098
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| |||| | ||| | || ||||||| ||||| |||||||| |||||||||||
Sbjct 45756 CCACCTCTGAGACGAAGCACCAAATGAAGGGTAGACTCTTTTTGAATGTTGTAATCAGCG 45697
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| ||||| ||| || || || ||||||||| |||| || | |||||||| |||||
Sbjct 45696 AGTGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGG 45637
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| || || ||| || ||| | | || | || || | ||| ||
Sbjct 45636 ATTCCTTCCTTATCCTGAATCTTAGCTTTAACATTATCAATAGTATCAGAACTTTCAACC 45577
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|| | ||| | || ||||| ||||| || || || || || ||||||
Sbjct 45576 TCCAAAGTGATGGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCATA 45529
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| |||| ||| | | ||| ||||| | || ||||| || || || |||||||| |
Sbjct 45528 CCACCTCTTAACCTGAGAACCAAATGTAGCGTTGATTCCTTCTGGATATTGTAATCTGCC 45469
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || | ||||| || ||||||||||| |||||| | ||||| || |||||
Sbjct 45468 AAGGTACGACCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCTGGAGGA 45409
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| || || ||| ||| || | | || | ||||| | | || ||
Sbjct 45408 ATACCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACC 45349
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | ||| | |||||||| || | |||||| ||||| ||||||||
Sbjct 45348 TCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 45302
>seq530
Length=553347
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||| || | |||||| || || |||| || || || || || ||||||||||| |
Sbjct 260440 CCTCCACGGAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCC 260381
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || || ||||| ||||| || || || |||||| | ||||| || |||||
Sbjct 260380 AAAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 260321
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| || |||||||| ||| || ||| | | || | ||||| | | || |||
Sbjct 260320 ATACCCTCTTTGTCTTGAATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTCTCCACT 260261
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|| | ||| | ||||| || |||||||| || || || || ||||||
Sbjct 260260 TCCAAAGTAATGGTCTTTCCTGTCAATGTCTTGACAAAAATCTGCATA 260213
>seq980
Length=1630315
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| |||| ||| | | ||| ||||| | || ||||| || || || |||||||| |
Sbjct 2852 CCACCTCTTAACCTGAGAACCAAATGTAGCGTTGATTCCTTCTGGATATTGTAATCTGCC 2911
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || | ||||| || ||||||||||| |||||| | ||||| || |||||
Sbjct 2912 AAGGTACGACCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCTGGAGGA 2971
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| || || ||| ||| || | | || | ||||| | | || ||
Sbjct 2972 ATACCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACC 3031
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | ||| | |||||||| || | |||||| ||||| ||||||||
Sbjct 3032 TCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 3078
>seq1780
Length=424430
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243
|| || || | ||| | ||| | |||| || || ||||| || ||||||||||| |||
Sbjct 96774 CCACCGCGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAATCCGCT 96833
Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
| |||| ||||| || || || || ||| |||| || | |||||||| || ||
Sbjct 96834 AAA-GTGCGACCATCTTCAAGCTGCTTCCCGGCAAAGATTAGCCTCTGCTGATCCGGTGG 96892
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|| ||||||||||| ||| ||| || | | || | || || | | ||| ||
Sbjct 96893 GATCCCTTCTTTGTCCTGAATCTTTGCCTTCACATTGTCAATGGTATCAGAGCTTTCCAC 96952
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
||||| || | ||||| || ||||| || || || ||||| |||||
Sbjct 96953 TTCAAGCGTGATGGTCTTTCCCGTCAAAGTCTTGACAAATATCTGCAT 97000
>seq687
Length=897029
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261
||| || |||| || || |||||||| || |||||||| || || | ||| ||
Sbjct 268051 AACCAAGTGAAGGGTTGACTCTTTTTGAATATTGTAATCAGCCAAAGTACGACCGTCCTC 267992
Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321
||||||||||| ||| |||| || | ||||| || || || || ||||| |||||
Sbjct 267991 AAGTTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGCGGGATTCCTTCCTTGTCTTG 267932
Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381
|| ||| || | | || | ||||| | | ||| || |||| ||| | |||||
Sbjct 267931 GATCTTTGCCTTGACATTGTCAATTGTGTCAGAGCTTTCGACCTCAAGAGTTATGGTCTT 267872
Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412
||| || | || || ||||| || ||||||
Sbjct 267871 GCCAGTAAGAGTCTTGACGAAGATCTGCATA 267841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488530326874800
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