Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 176 1e-38
seq415 98.7 2e-15
>seq1432
Length=495105
Score = 176 bits (194), Expect = 1e-38
Identities = 332/482 (69%), Gaps = 15/482 (3%)
Strand=Plus/Plus
Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTT-CTACAAG 131859
||||||||||||||||| || |||||||| | | ||| | | || || || ||
Sbjct 65868 AAGAAAGCAGAATGGGCAATGAAATGGATCAACG--GAT--CTCAAAGCTTCGCTGAGAG 65923
Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCT 131918
| | |||||||||||||| ||||||||||||||||| || ||| ||||| ||| | || |
Sbjct 65924 AATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGCTTT-TGTTCGATAT 65982
Query 131919 TTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGA 131978
| ||| | ||||| || || || |||||||||||| |||| || || |||| || ||||
Sbjct 65983 TCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGA 66042
Query 131979 GAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGA----T 132034
|||| |||| | || ||| || ||| || |||||||| | | || | |
Sbjct 66043 GAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGATCTATAG----TCTTCTTAGAACT 66098
Query 132035 AAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAG 132094
|| ||||||| | | | | ||| || | | || || ||||| ||||||| |||
Sbjct 66099 AAGCTTGATGTAGAACGTTTGAAATCGATTGTTTGTGATGCGGTTGAGATCGAGAGAGAG 66158
Query 132095 TTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAG 132154
||| || || || | ||||| ||| |||| |||||| ||| | |||| ||
Sbjct 66159 TTTGTTTGCGACGCGCTTCCTTGTGCCTTGGTTGGTATGAATCGTGATTTGATGAGTCAG 66218
Query 132155 TACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAAC 132214
|||||||| || ||||||||| | ||| | | ||||| | | ||| | |||
Sbjct 66219 TACATTGAGTTTGTTGCTGATAGGTTATTGACTGCGCTTGGGTGTGGTAAGGTGTATGGT 66278
Query 132215 ACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTC 132274
|| || | | |||||||| | ||||||||| |||||||||| ||||| ||
Sbjct 66279 GTGAGTAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAAGGTAAAACTAACTTTTTT 66338
Query 132275 GA 132276
||
Sbjct 66339 GA 66340
>seq415
Length=609146
Score = 98.7 bits (108), Expect = 2e-15
Identities = 97/122 (80%), Gaps = 4/122 (3%)
Strand=Plus/Minus
Query 131869 TTTTG--CTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCT 131925
||||| |||||||||||||||| ||||| || || ||||| ||| | ||||| |||||
Sbjct 100564 TTTTGACCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTT-TGTTCAATCTTCTGGCT 100506
Query 131926 TAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGA 131985
||||| || ||| | ||||||||||| |||| ||||| |||| ||||| |||| ||
Sbjct 100505 AAAGAAACGAGGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCTCGAGACGA 100446
Query 131986 AG 131987
||
Sbjct 100445 AG 100444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186778753678679
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |