Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1432 176 1e-38 seq415 98.7 2e-15 >seq1432 Length=495105 Score = 176 bits (194), Expect = 1e-38 Identities = 332/482 (69%), Gaps = 15/482 (3%) Strand=Plus/Plus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTT-CTACAAG 131859 ||||||||||||||||| || |||||||| | | ||| | | || || || || Sbjct 65868 AAGAAAGCAGAATGGGCAATGAAATGGATCAACG--GAT--CTCAAAGCTTCGCTGAGAG 65923 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCT 131918 | | |||||||||||||| ||||||||||||||||| || ||| ||||| ||| | || | Sbjct 65924 AATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGCTTT-TGTTCGATAT 65982 Query 131919 TTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGA 131978 | ||| | ||||| || || || |||||||||||| |||| || || |||| || |||| Sbjct 65983 TCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGA 66042 Query 131979 GAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGA----T 132034 |||| |||| | || ||| || ||| || |||||||| | | || | | Sbjct 66043 GAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGATCTATAG----TCTTCTTAGAACT 66098 Query 132035 AAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAG 132094 || ||||||| | | | | ||| || | | || || ||||| ||||||| ||| Sbjct 66099 AAGCTTGATGTAGAACGTTTGAAATCGATTGTTTGTGATGCGGTTGAGATCGAGAGAGAG 66158 Query 132095 TTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAG 132154 ||| || || || | ||||| ||| |||| |||||| ||| | |||| || Sbjct 66159 TTTGTTTGCGACGCGCTTCCTTGTGCCTTGGTTGGTATGAATCGTGATTTGATGAGTCAG 66218 Query 132155 TACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAAC 132214 |||||||| || ||||||||| | ||| | | ||||| | | ||| | ||| Sbjct 66219 TACATTGAGTTTGTTGCTGATAGGTTATTGACTGCGCTTGGGTGTGGTAAGGTGTATGGT 66278 Query 132215 ACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTC 132274 || || | | |||||||| | ||||||||| |||||||||| ||||| || Sbjct 66279 GTGAGTAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAAGGTAAAACTAACTTTTTT 66338 Query 132275 GA 132276 || Sbjct 66339 GA 66340 >seq415 Length=609146 Score = 98.7 bits (108), Expect = 2e-15 Identities = 97/122 (80%), Gaps = 4/122 (3%) Strand=Plus/Minus Query 131869 TTTTG--CTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCT 131925 ||||| |||||||||||||||| ||||| || || ||||| ||| | ||||| ||||| Sbjct 100564 TTTTGACCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTT-TGTTCAATCTTCTGGCT 100506 Query 131926 TAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGA 131985 ||||| || ||| | ||||||||||| |||| ||||| |||| ||||| |||| || Sbjct 100505 AAAGAAACGAGGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCTCGAGACGA 100446 Query 131986 AG 131987 || Sbjct 100445 AG 100444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186778753678679