Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq400 96.9 3e-15 seq788 91.5 1e-13 seq1311 86.0 6e-12 seq980 86.0 6e-12 seq713 86.0 6e-12 seq1891 84.2 2e-11 seq1676 84.2 2e-11 >seq400 Length=13612 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 |||||||| | | | |||||||| || ||||||||||| ||| | |||||| ||| || Sbjct 1609 ACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCT-AGGGTACGACCATCCTC 1667 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| ||||||| | |||| || | ||| || || ||||| || || |||||||| Sbjct 1668 TAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATTCCCTCTTTATCCTG 1727 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || ||| | | || | || || | ||| || |||| || | ||||| Sbjct 1728 AATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACCTCGAGGGTGATTGTTTT 1787 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| ||||| || | || || ||||| Sbjct 1788 ACCAGTGAGAGTCTTGACAAAGATTTGCAT 1817 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | |||||| || | | |||| ||||| || || ||||| ||| || |||||| Sbjct 2056 AAACGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCCAAGGTACGG 2115 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||||||||||| |||||| | ||| || || ||||| |||||||| Sbjct 2116 CCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAATGCCTTCC 2175 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || ||| ||| || | | || | || || | ||| || |||| || Sbjct 2176 TTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTG 2235 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||| || ||||| | || || ||||| Sbjct 2236 ATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 2273 >seq788 Length=1574065 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || |||||||||||| || ||||| ||| ||| Sbjct 694012 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTCG 693953 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | |||| |||||||| || || ||||| || ||||| ||||| Sbjct 693952 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGG 693893 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | || |||| |||||| || | || | || || Sbjct 693892 ATCTTGGCCTTTACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATAGTCTTC 693833 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || |||||||| || | ||||||||||||| Sbjct 693832 CCGGTCAGAGTCTTCACGAAAATCTGCATG 693803 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || |||||| ||| || |||||||| || | Sbjct 108674 GACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGCCCATCCTCAAGCTGTTTTCCAGCG 108615 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || ||||| |||||||| || || || || |||| Sbjct 108614 AAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 108555 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||| ||||| | || | ||| || ||||||| ||| || Sbjct 108554 TTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATCGTCTTGCCAGTCAAAGTCTTG 108495 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 108494 ACGAAGATCTGCAT 108481 >seq1311 Length=673479 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | |||||| || | | |||| ||||| || || ||||| ||| || |||||| Sbjct 79366 AAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCCAAGGTACGA 79307 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||||||||||| |||||| | ||| || || ||||| |||||||| Sbjct 79306 CCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAATGCCTTCC 79247 Query 132026 TTATC 132030 || || Sbjct 79246 TTGTC 79242 >seq980 Length=1630315 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||||| |||| || || || || ||||| || || |||||| |||||| Sbjct 2869 AACCAAATGTAGCGTTGATTCCTTCTGGATATTGTAATCTGCCAAGGTACGACCATCTTC 2928 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||||||||| | |||| | | ||| || |||||||| || ||||| ||||| Sbjct 2929 TAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCTGGAGGAATACCTTCCTTATCCTG 2988 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| ||| || | | || | || || | ||| || |||| || | || || Sbjct 2989 AATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGTCTT 3048 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| | |||||| ||||| Sbjct 3049 GCCAGTGAGTGTTTTCACGAAAATTTGCAT 3078 >seq713 Length=176098 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||||| |||| || || || || ||||| || || |||||| |||||| Sbjct 45511 AACCAAATGTAGCGTTGATTCCTTCTGGATATTGTAATCTGCCAAGGTACGACCATCTTC 45452 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||||||||| | |||| | | ||| || |||||||| || ||||| ||||| Sbjct 45451 TAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCTGGAGGAATACCTTCCTTATCCTG 45392 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| ||| || | | || | || || | ||| || |||| || | || || Sbjct 45391 AATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGTCTT 45332 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| | |||||| ||||| Sbjct 45331 GCCAGTGAGTGTTTTCACGAAAATTTGCAT 45302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | |||||||||||||||||||| || | || || || || Sbjct 45738 ACCAAATGAAGGGTAGACTCTTTTTGAATGTTGTAATCAGCGAGTGTGCGACCGTCCTCA 45679 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||| | | |||| || | ||| ||||| ||||| || ||||| ||||| | Sbjct 45678 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGA 45619 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | || | |||||| | || || || | || | ||||| Sbjct 45618 ATCTTAGCTTTAACATTATCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTTG 45559 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | ||||||||||| Sbjct 45558 CCAGTCAACGTCTTCACAAAAATCTGCAT 45530 >seq1891 Length=27579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||| || | ||| || |||||| ||||| ||||| | | Sbjct 11222 GACTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGTCCATCTTCAAGCTGCTTACCAGCA 11281 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||||| || || |||||||| ||| || ||||| Sbjct 11282 AAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCTTTATCCTGAATCTTAGCTTTCACA 11341 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | || || || | || | ||||| ||||||| || || Sbjct 11342 TTATCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTTGCCAGTCAACGTCTTC 11401 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 11402 ACAAAAATCTGCAT 11415 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | |||| || || || || ||||| ||| || |||||| ||| || Sbjct 11434 AACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCGGCCAAGGTACGACCATCCTC 11493 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||||||||||| |||| | | ||| || || ||||| || ||||| ||||| Sbjct 11494 CAGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCTTCCTTATCCTG 11553 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| ||| || | | || | || || | ||| || |||| || | || || Sbjct 11554 AATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGTCTT 11613 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| | |||||| ||||| Sbjct 11614 GCCAGTAAGTGTTTTCACGAAAATTTGCAT 11643 >seq1676 Length=2083552 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| |||||| || | |||||||||| || ||| |||| || || |||| | Sbjct 1910223 CAACCGCAGAACCAAGTGGAGAGTTGACTCTTTCTGGATGCTGTAATCAGCCAAGGTAAG 1910164 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||| |||||||||| ||||| | |||| || || || || ||| ||| |||||||| Sbjct 1910163 GCCATCCTCGAGCTGTTGACCGGCAAAGATAAGTCGTTGCTGGTCTAAAGGAATGCCTTC 1910104 Query 132025 TTTATC 132030 ||| || Sbjct 1910103 TTTGTC 1910098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476597860844040