Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq400 96.9 3e-15
seq788 91.5 1e-13
seq1311 86.0 6e-12
seq980 86.0 6e-12
seq713 86.0 6e-12
seq1891 84.2 2e-11
seq1676 84.2 2e-11
>seq400
Length=13612
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973
|||||||| | | | |||||||| || ||||||||||| ||| | |||||| ||| ||
Sbjct 1609 ACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCT-AGGGTACGACCATCCTC 1667
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
||||| ||||||| | |||| || | ||| || || ||||| || || ||||||||
Sbjct 1668 TAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATTCCCTCTTTATCCTG 1727
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
||| || ||| | | || | || || | ||| || |||| || | |||||
Sbjct 1728 AATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACCTCGAGGGTGATTGTTTT 1787
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|||||| ||||| || | || || |||||
Sbjct 1788 ACCAGTGAGAGTCTTGACAAAGATTTGCAT 1817
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965
|| || | |||||| || | | |||| ||||| || || ||||| ||| || ||||||
Sbjct 2056 AAACGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCCAAGGTACGG 2115
Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025
|||||| ||||||||||||| |||||| | ||| || || ||||| ||||||||
Sbjct 2116 CCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAATGCCTTCC 2175
Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085
|| || ||| ||| || | | || | || || | ||| || |||| ||
Sbjct 2176 TTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTG 2235
Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| || || ||||| || ||||| | || || |||||
Sbjct 2236 ATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 2273
>seq788
Length=1574065
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | ||||| || || |||||||||||| || ||||| ||| |||
Sbjct 694012 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTCG 693953
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||| || || | |||| |||||||| || || ||||| || ||||| |||||
Sbjct 693952 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGG 693893
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| || || | | || | || |||| |||||| || | || | || ||
Sbjct 693892 ATCTTGGCCTTTACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATAGTCTTC 693833
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| |||||||| || | |||||||||||||
Sbjct 693832 CCGGTCAGAGTCTTCACGAAAATCTGCATG 693803
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || ||||||||||| || |||||| ||| || |||||||| || |
Sbjct 108674 GACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGCCCATCCTCAAGCTGTTTTCCAGCG 108615
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| |||||||| || || ||||| |||||||| || || || || ||||
Sbjct 108614 AAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 108555
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | ||| ||||| | || | ||| || ||||||| ||| ||
Sbjct 108554 TTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATCGTCTTGCCAGTCAAAGTCTTG 108495
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 108494 ACGAAGATCTGCAT 108481
>seq1311
Length=673479
Score = 86.0 bits (94), Expect = 6e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965
|| || | |||||| || | | |||| ||||| || || ||||| ||| || ||||||
Sbjct 79366 AAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCCAAGGTACGA 79307
Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025
|||||| ||||||||||||| |||||| | ||| || || ||||| ||||||||
Sbjct 79306 CCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAATGCCTTCC 79247
Query 132026 TTATC 132030
|| ||
Sbjct 79246 TTGTC 79242
>seq980
Length=1630315
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
||||||||||| |||| || || || || ||||| || || |||||| ||||||
Sbjct 2869 AACCAAATGTAGCGTTGATTCCTTCTGGATATTGTAATCTGCCAAGGTACGACCATCTTC 2928
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
||||||||||| | |||| | | ||| || |||||||| || ||||| |||||
Sbjct 2929 TAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCTGGAGGAATACCTTCCTTATCCTG 2988
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
||| ||| || | | || | || || | ||| || |||| || | || ||
Sbjct 2989 AATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGTCTT 3048
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| || ||||| | |||||| |||||
Sbjct 3049 GCCAGTGAGTGTTTTCACGAAAATTTGCAT 3078
>seq713
Length=176098
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
||||||||||| |||| || || || || ||||| || || |||||| ||||||
Sbjct 45511 AACCAAATGTAGCGTTGATTCCTTCTGGATATTGTAATCTGCCAAGGTACGACCATCTTC 45452
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
||||||||||| | |||| | | ||| || |||||||| || ||||| |||||
Sbjct 45451 TAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCTGGAGGAATACCTTCCTTATCCTG 45392
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
||| ||| || | | || | || || | ||| || |||| || | || ||
Sbjct 45391 AATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGTCTT 45332
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| || ||||| | |||||| |||||
Sbjct 45331 GCCAGTGAGTGTTTTCACGAAAATTTGCAT 45302
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
|||||||| | | | |||||||||||||||||||| || | || || || ||
Sbjct 45738 ACCAAATGAAGGGTAGACTCTTTTTGAATGTTGTAATCAGCGAGTGTGCGACCGTCCTCA 45679
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||| ||||| | | |||| || | ||| ||||| ||||| || ||||| ||||| |
Sbjct 45678 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGA 45619
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| || ||| | | || | |||||| | || || || | || | |||||
Sbjct 45618 ATCTTAGCTTTAACATTATCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTTG 45559
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||||| || || | |||||||||||
Sbjct 45558 CCAGTCAACGTCTTCACAAAAATCTGCAT 45530
>seq1891
Length=27579
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| ||||| |||||||| || | ||| || |||||| ||||| ||||| | |
Sbjct 11222 GACTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGTCCATCTTCAAGCTGCTTACCAGCA 11281
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || | ||| ||||| ||||| || || |||||||| ||| || |||||
Sbjct 11282 AAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCTTTATCCTGAATCTTAGCTTTCACA 11341
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | |||||| | || || || | || | ||||| ||||||| || ||
Sbjct 11342 TTATCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTTGCCAGTCAACGTCTTC 11401
Query 132110 ATGAAAATCTGCAT 132123
| |||||||||||
Sbjct 11402 ACAAAAATCTGCAT 11415
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
||||||||| | |||| || || || || ||||| ||| || |||||| ||| ||
Sbjct 11434 AACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCGGCCAAGGTACGACCATCCTC 11493
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
||||||||||||| |||| | | ||| || || ||||| || ||||| |||||
Sbjct 11494 CAGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCTTCCTTATCCTG 11553
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
||| ||| || | | || | || || | ||| || |||| || | || ||
Sbjct 11554 AATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGTCTT 11613
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| || ||||| | |||||| |||||
Sbjct 11614 GCCAGTAAGTGTTTTCACGAAAATTTGCAT 11643
>seq1676
Length=2083552
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
||| |||| |||||| || | |||||||||| || ||| |||| || || |||| |
Sbjct 1910223 CAACCGCAGAACCAAGTGGAGAGTTGACTCTTTCTGGATGCTGTAATCAGCCAAGGTAAG 1910164
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
||| |||||||||| ||||| | |||| || || || || ||| ||| ||||||||
Sbjct 1910163 GCCATCCTCGAGCTGTTGACCGGCAAAGATAAGTCGTTGCTGGTCTAAAGGAATGCCTTC 1910104
Query 132025 TTTATC 132030
||| ||
Sbjct 1910103 TTTGTC 1910098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476597860844040
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