Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq530 86.0 6e-12
>seq530
Length=553347
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | ||||| || ||||| || ||||| | || || | ||||| || |
Sbjct 260214 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATTACTTTGGAAGTGGAGAGCTCT 260273
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || ||||| | || ||| || ||| || ||||||||||| || || || |||
Sbjct 260274 GACACCATCGACAATGTCAAAGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCAG 260333
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| || | || | || ||| || ||||| ||||||| |||| | | ||||||||
Sbjct 260334 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTTTGGCTGATTACAAC 260393
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
||||| || || ||||| |||| || || ||
Sbjct 260394 ATTCAGAAGGAGTCCACTCTTCACTTGGTCTT 260425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445081942920480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |