Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1432 203 5e-46 seq415 141 1e-27 >seq1432 Length=495105 Score = 203 bits (224), Expect = 5e-46 Identities = 364/527 (69%), Gaps = 11/527 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| |||| | ||| ||||| |||||| | |||| |||| || ||||| Sbjct 65497 TGTTCCCAATCCAATACCCACAGATCTGGGAGATGTACAAGAAAG-CCGAAGCGTCCTTC 65555 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTG---TCGCTGAGC 1455869 ||||||||||| || ||||| ||| |||| | |||||| || || | | Sbjct 65556 TGGACCGCCGAAGAAGTCGATCTCTCTCAAGACAATCGCGACTGGGAAAACTCACTAACC 65615 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 ||||||| || || |||||||| |||||||||||||| || |||||| || || || Sbjct 65616 AACGACGAACGTCACTTCATCAAACACGTCCTCGCCTTCTT-CGCCGCATCAGACGGAAT 65674 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| |||||| || | || || ||| || || || | |||| || ||| Sbjct 65675 CGTTCTCGAGAATCTCTCAACACGATTCATGTCCGATGTTCAGGTCTCAGAAGCTCGTGC 65734 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||| ||||| ||||| ||||| || || || ||||| | || ||||| | Sbjct 65735 CTTCTACGGATTCCAAATCGCAATCGAGAATATTCATTCTGAGATGTATAGTCTCCTTCT 65794 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 |||||| ||| |||| ||| |||| || || ||||||||||| ||||| || | Sbjct 65795 CGACACTTACATCAAAGACAACAAAGAGAGAGATCATCTCTTTCGCGCAATCGAAACAAT 65854 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 || | |||| ||| || || || ||||| ||||| ||||||||| || ||| | Sbjct 65855 TCCTTGTGTGACGAAGAAAGCAGAATGGGCAATGAAATGGATCAAC-----GGATCTCAA 65909 Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 ||| || ||| | |||| | ||||| |||| || || || || ||||| || || Sbjct 65910 AGCTTCGCTGAGAGAATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGC 65969 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || || | || || ||| | ||||| || || | ||||| || || Sbjct 65970 TTTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACT 66016 >seq415 Length=609146 Score = 141 bits (156), Expect = 1e-27 Identities = 275/403 (68%), Gaps = 5/403 (1%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | ||||| | ||| |||||||||||| |||||| |||| || || || Sbjct 101166 TGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAG-CCGAAGCATCATTC 101108 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGC 1455869 |||||||| || || || || || |||| | |||||| || | | Sbjct 101107 TGGACCGCTGAAGAAGTAGATCTATCACAAGACAACCGCGACTGGGAAAACAATCTCAAC 101048 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||| || || || |||||||| || |||||||| ||| |||||||| ||| || || Sbjct 101047 GACGGTGAACGTCACTTCATCAAACATGTCCTCGC-TTTCTTCGCCGCATCCGACGGAAT 100989 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| ||||| || || || || ||| || || ||| | | ||||| ||| Sbjct 100988 CGTATTAGAGAATCTCGCTTCTCGATTCATGTCCGATGTTCAAGTCTCGGAGGCGCGTGC 100929 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||| ||||||||||| || ||||||||||| || || | || ||||| | Sbjct 100928 TTTCTACGGTTTCCAGATCGCGATTGAAAACATCCATTCGGAGATGTATAGTCTCCTTCT 100869 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 ||| || || |||| || || | || || |||||||| ||||| || ||| | Sbjct 100868 CGATACGTATATCAAAGATAACAAAGAAAGAGATCATCTCTTTCGTGCCATTGAAACGAT 100809 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 || | || ||| || || | ||||||||||| |||||| Sbjct 100808 TCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATC 100766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177595244334718