Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq1127 107 2e-18 >seq1127 Length=645582 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 158808 GACGGCGATCAAGTTATTCAGTGTGAGTCCGATCAGTACATTCTAGACGCTGCAGAAGAG 158867 || || || |||| ||| ||||||| ||| ||| |||| ||||| || || || Sbjct 574069 GAAGGTGAGCAAGAGATTGAGTGTGACGACGACGTTTACGTTCTTGACGCGGCCGAGGAA 574010 Query 158868 GCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGTGCCTGTTCTTCCTGTGCTGGTAAA 158927 || ||| | ||| | || || || ||||||||| | ||||| ||||||||||||| Sbjct 574009 GCTGGAATCGATTTGCCATACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAA 573950 Query 158928 CTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCATTCTTGGATGATGATCAGATTGCA 158987 |||| ||| ||||||| || || || ||| | |||||||| ||||||| Sbjct 573949 GTTGTGTCTGGATCTGTTGATCAGTCTGACCAAAGTTTCCTTGATGATGAACAGATTGGT 573890 Query 158988 GAAGGATTTATCCTTACGTGTGTATCTTATCCCACTTCTGAT 159029 ||||| ||| | || || |||| ||||||| ||||||||| Sbjct 573889 GAAGGGTTTGTTCTCACTTGTGCTGCTTATCCTACTTCTGAT 573848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573007962490800