Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq1127 87.8 2e-12 >seq1127 Length=645582 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 161090 GAAGGTAACCAAGTTGTTCAATGTGAACCAGACCAGTACATTTTAGATGCAGCAGAAGAG 161149 |||||| | |||| || | ||||| ||| ||| || | || || || || || Sbjct 574069 GAAGGTGAGCAAGAGATTGAGTGTGACGACGACGTTTACGTTCTTGACGCGGCCGAGGAA 574010 Query 161150 GCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAA 161209 || ||| | ||| | || ||||| ||||||||| |||| || |||||| |||||| Sbjct 574009 GCTGGAATCGATTTGCCATACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAA 573950 Query 161210 ATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAA 161269 || | || || | || || ||||||||||| ||| | |||||||| ||||||| Sbjct 573949 GTTGTGTCTGGATCTGTTGATCAGTCTGACCAAAGTTTCCTTGATGATGAACAGATTGGT 573890 Query 161270 TCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 || || || | || |||| ||| ||||||||| Sbjct 573889 GAAGGGTTTGTTCTCACTTGTGCTGCTTATCCTACT 573854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559488340881800