Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_026924.1
Length=174885
Score E
Sequences producing significant alignments: (Bits) Value
seq1127 87.8 2e-12
>seq1127
Length=645582
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 161090 GAAGGTAACCAAGTTGTTCAATGTGAACCAGACCAGTACATTTTAGATGCAGCAGAAGAG 161149
|||||| | |||| || | ||||| ||| ||| || | || || || || ||
Sbjct 574069 GAAGGTGAGCAAGAGATTGAGTGTGACGACGACGTTTACGTTCTTGACGCGGCCGAGGAA 574010
Query 161150 GCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAA 161209
|| ||| | ||| | || ||||| ||||||||| |||| || |||||| ||||||
Sbjct 574009 GCTGGAATCGATTTGCCATACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAA 573950
Query 161210 ATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAA 161269
|| | || || | || || ||||||||||| ||| | |||||||| |||||||
Sbjct 573949 GTTGTGTCTGGATCTGTTGATCAGTCTGACCAAAGTTTCCTTGATGATGAACAGATTGGT 573890
Query 161270 TCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305
|| || || | || |||| ||| |||||||||
Sbjct 573889 GAAGGGTTTGTTCTCACTTGTGCTGCTTATCCTACT 573854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 559488340881800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |