Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq1127 95.1 1e-14 >seq1127 Length=645582 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 179485 CTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTTGT 179544 |||||||| || || ||||| || | ||| | |||||||| ||||||||| ||||| Sbjct 574027 CTTGACGCGGCCGAGGAAGCTGGAATCGATTTGCCATACTCTTGCCGTGCTGGTTCTTGT 573968 Query 179545 TCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAAGCGATCAATCGTTTTTG 179604 || |||||||||||| | | | ||||||||||||||| || ||| || | Sbjct 573967 TCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGATCAGTCTGACCAAAGTTTCCTT 573908 Query 179605 GATGACGATCAAAT-GGAGTCGGGATTTATTCTGACTTGCGTATCTTATCCTACTAGTGA 179663 ||||| || || || || | ||| ||| |||| ||||| | ||||||||||| ||| Sbjct 573907 GATGATGAACAGATTGGTGAAGGG-TTTGTTCTCACTTGTGCTGCTTATCCTACTTCTGA 573849 Query 179664 T 179664 | Sbjct 573848 T 573848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614600398389920