Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_027130.1
Length=172688
Score E
Sequences producing significant alignments: (Bits) Value
seq1127 93.3 5e-14
>seq1127
Length=645582
Score = 93.3 bits (102), Expect = 5e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 159546 TACATTTTAGACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGT 159605
||| || | ||||| || |||||||| || | ||| || || || || |||||||||
Sbjct 574033 TACGTTCTTGACGCGGCCGAGGAAGCTGGAATCGATTTGCCATACTCTTGCCGTGCTGGT 573974
Query 159606 GCTTGTAGCACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCT 159665
||||| | ||||||||||| ||| | || | ||||| || ||||||| |
Sbjct 573973 TCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGATCAGTCTGACCAAAGT 573914
Query 159666 TTCTTGGACGATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACA 159725
||| | || ||||| || | | |||||| ||| |||||||||||| | || |||||
Sbjct 573913 TTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTGTGCTGCTTATCCTACT 573854
Query 159726 TCAGACGTAACTAT 159739
|| || || || ||
Sbjct 573853 TCTGATGTTACCAT 573840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552458137645120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |