Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1432 246 4e-60 seq415 176 6e-39 seq1009 118 1e-21 seq778 116 5e-21 >seq1432 Length=495105 Score = 246 bits (272), Expect = 4e-60 Identities = 613/917 (67%), Gaps = 23/917 (3%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || || |||||||| | ||||| ||||| |||||||| |||| | || || Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 |||||| ||||||| |||||| | || ||| || | | || | | | | Sbjct 66305 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 66246 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 || ||||| |||||||| || ||||| |||||| |||| |||||| || | | Sbjct 66245 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCAA 66186 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | || || || || | ||||||| | ||||| || || || || | || Sbjct 66185 GGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAACAAT 66126 Query 39565 CGATGTTAC---TACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGC 39621 |||| | | | | ||||| | | | | || || | || | || || || || Sbjct 66125 CGATTTCAAACGTTCTACATCAAGCT-TAGTTCTAAGAA--GACTATAGATCAAACAAGC 66069 Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681 ||| ||||| || || || || ||||| ||| ||||||||||| |||||||||||||| Sbjct 66068 GAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGG 66009 Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGC 39740 ||||| ||| || || || | ||| ||||| | | |||||| | ||||| ||||| || | Sbjct 66008 CATTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAAGAATATAC 65950 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT--GTATCATTATGTATCCA 39798 |||| || ||||| || || | |||||| || | ||| ||| | || ||||| Sbjct 65949 CTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGT-TG-ATCCA 65892 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 ||| |||||| || ||||||||| | |||||||| |||||||| || || |||||| Sbjct 65891 TTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAAGAG 65832 Query 39859 ATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918 || || | | || | | ||||| | || || || | | ||||||||||| || || Sbjct 65831 ATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 65772 Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978 ||| || || || || || || || |||||||| || | ||||| | | || || Sbjct 65771 ATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTGAAC 65712 Query 39979 CTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038 || || |||| | | | ||| || || ||||| || ||||| || || Sbjct 65711 ATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGAAGAA 65652 Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCG--GGT--GTCAATTTATTCCAGTC-- 40092 || | || ||||| || || | ||| ||| ||| || | ||| | |||||| Sbjct 65651 GGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTT-TCCCAGTCGC 65593 Query 40093 -ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTT 40151 |||| |||| || | ||| |||||||| || ||||| || ||||| || || || | Sbjct 65592 GATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCT 65536 Query 40152 TGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 ||||||| | ||| || | | ||||| ||||| || ||| |||| || ||| || Sbjct 65535 TGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTTG 65476 Query 40212 TTGCAAGGATGGGTTCC 40228 || ||||| |||||| Sbjct 65475 GTGTTAGGATTGGTTCC 65459 >seq415 Length=609146 Score = 176 bits (194), Expect = 6e-39 Identities = 290/416 (70%), Gaps = 3/416 (1%) Strand=Plus/Plus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| ||| ||||| | |||||||||| || ||||| || ||||| || ||| | Sbjct 100767 ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGA 100826 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 ||||||| || | |||| | ||||||| | ||| ||||| | | ||||||||||| Sbjct 100827 AAGAGATGATCTCTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATC 100886 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || |||||||||||||||||||| ||||| || ||||| ||| | || || | | | Sbjct 100887 TCCGAATGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACT 100946 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || || || || |||| || | ||| || || ||||| || ||||| Sbjct 100947 TGAACATCGGACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCG 101006 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTGTCAAT-TTATTCCAG 40090 || || || | |||||||| || || | |||| || | || | | || | |||| Sbjct 101007 AAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAG 101066 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | | |||| ||||| ||||||||||||||| ||||| || || || || || ||| Sbjct 101067 TCGCGGTTGTCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTT 101126 Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206 |||||||| | ||| || | | || || ||||| || ||| ||||| | ||| Sbjct 101127 TTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 101182 Score = 98.7 bits (108), Expect = 1e-15 Identities = 280/426 (66%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || || |||||||| |||||||| || || |||||||| |||| | || ||| Sbjct 100130 TTTCTGATAATCACCAACACGTTTCTCAAAGAAGTTAGTTTTCCCTTGAAGCGAGATAAG 100189 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 |||||| |||||||||||||||| ||| || || | || | | | Sbjct 100190 TTCCATCCAATCAAACGGATTAGTAGCACCGTACACCTTCCCGTACCCAAGCGCACCCAA 100249 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 | ||||| |||||||| || || || |||||| |||| ||||| || | | Sbjct 100250 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 100309 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || || || || | ||||||| | ||||| || || || || | || Sbjct 100310 CGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAAACGAT 100369 Query 39565 CGATGTTACTACCTCATCACTCGG--TGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 ||| | || || ||||| | | | | | || || || | | | || ||| Sbjct 100370 TGATTTCACGCGTTCTTCACTTAGCTTAGTTTTGAGAAGCGTGTAGAGAAGA--CAAGCG 100427 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || || || ||||| || || |||| | || |||||||| |||||||| ||||||||| Sbjct 100428 AAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCCAGGC 100487 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAAGATGCC 39741 || || || || || || ||||| || || | | |||||| ||| || |||||||| || Sbjct 100488 ATGAGTCCTCGTTTCTTTAGCCAGAAGATTG-AACAAAAGCTTCCGGAGAAGAAGATACC 100546 Query 39742 TTCTAC 39747 ||| || Sbjct 100547 TTCAAC 100552 >seq1009 Length=3105692 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 1455503 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACC 1455444 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| ||||| || ||| ||| || ||||| |||| || || || || || Sbjct 1455443 ATTAGATGCTCCATTGGTACCACGAATGTAGCTTCCAGTTGCACGGATGTTGTGAACTGA 1455384 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || ||| ||| || | |||||| |||||||||||||||||| Sbjct 1455383 AACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATAT 1455324 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 1455323 CCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 1455281 Score = 102 bits (112), Expect = 1e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 ||| ||||||||| ||||||| || |||||| ||||| | | ||||||| || || || Sbjct 1457284 TAAGACTCTACGACTGTAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAG 1457225 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852 ||| || ||||| ||||||||||| |||||||||| | | |||||| | |||| Sbjct 1457224 AATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACCAGAAGAGAATTTCTGATTCCATT 1457165 Query 68853 TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCA 68912 || || |||| | ||| ||| ||||| | || ||||| | |||||||| Sbjct 1457164 CTTTGAAATCGTATCCCTGAGAGTAGCCCAGTCCCAGCGGTCTGATGGAATTACATTCCA 1457105 Query 68913 AAGATCGTATTGTAGAATTCC 68933 | ||| ||| |||||||| Sbjct 1457104 CATATCAGGTTGAAGAATTCC 1457084 Score = 89.7 bits (98), Expect = 7e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140 ||| |||||||||||||| | || || | |||||||||||||| ||||||| | | || Sbjct 1456761 AAGGATAAATGCATCTGCAAGACCTTGTATACCAATACCGATAGGCCTATGTCGCATGTT 1456702 Query 69141 TGAACTTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 ||| ||| ||| ||| | | ||||||| ||| | ||||||||| || |||||||| Sbjct 1456701 TGAGGTTTTTGCTGTCTCCACT-GGATAATGATTCACATCTATAATCTTGTTAAGATT 1456645 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | || || | ||||||||||| |||||||||||| | ||| | | || | Sbjct 1455172 GTTCCTGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATGG 1455113 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| ||||| || || ||||| || || || || | | || | ||||| | Sbjct 1455112 TAAGTTTTGATAGCGGAATCGATATCTTCCTTGTGGATGCCAACAGAAACCCTCATCAGC 1455053 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | ||| ||| ||| | | ||| || ||||||||| | || || Sbjct 1455052 ATGTGTTGAGGCCTTTCAACCACTTTGCCTTGCACTTTTAAGAGGTATGATCTCTCAAGC 1454993 Query 70171 GTTTTAAACCCAAAATA 70187 |||||||| ||||| || Sbjct 1454992 GTTTTAAATCCAAAGTA 1454976 >seq778 Length=452071 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 423151 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 423092 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| || ||||| |||| || |||||| || || Sbjct 423091 ATTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGA 423032 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || ||||| || ||| || | |||||| ||| | ||| || || || Sbjct 423031 AACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAAT 422972 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||||||| ||||| | ||||| ||||| Sbjct 422971 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 422930 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| || || || | ||||||||||| |||||||||||| | | ||| | || || Sbjct 422802 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 422743 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| |||| || || || || || || || || || || | || || | ||||| Sbjct 422742 GTAAGTTTGGATTGCAGAATCAATGTCTTCCTTGTGGATACCAACAGCAACCCTCATCAG 422683 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || ||||| | ||| || | | | | |||||| ||||| ||| | || || Sbjct 422682 CATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAAG 422623 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 ||||||||| ||||| || | |||| ||| || Sbjct 422622 AGTTTTAAATCCAAAGTAATCGTATTCAAAATC 422590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686889575139960