Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 246 4e-60
seq415 176 6e-39
seq1009 118 1e-21
seq778 116 5e-21
>seq1432
Length=495105
Score = 246 bits (272), Expect = 4e-60
Identities = 613/917 (67%), Gaps = 23/917 (3%)
Strand=Plus/Minus
Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384
||| || || |||||||| | ||||| ||||| |||||||| |||| | || ||
Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306
Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444
|||||| ||||||| |||||| | || ||| || | | || | | | |
Sbjct 66305 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 66246
Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504
|| ||||| |||||||| || ||||| |||||| |||| |||||| || | |
Sbjct 66245 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCAA 66186
Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564
| || || || || | ||||||| | ||||| || || || || | ||
Sbjct 66185 GGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAACAAT 66126
Query 39565 CGATGTTAC---TACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGC 39621
|||| | | | | ||||| | | | | || || | || | || || || ||
Sbjct 66125 CGATTTCAAACGTTCTACATCAAGCT-TAGTTCTAAGAA--GACTATAGATCAAACAAGC 66069
Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681
||| ||||| || || || || ||||| ||| ||||||||||| ||||||||||||||
Sbjct 66068 GAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGG 66009
Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGC 39740
||||| ||| || || || | ||| ||||| | | |||||| | ||||| ||||| || |
Sbjct 66008 CATTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAAGAATATAC 65950
Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT--GTATCATTATGTATCCA 39798
|||| || ||||| || || | |||||| || | ||| ||| | || |||||
Sbjct 65949 CTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGT-TG-ATCCA 65892
Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858
||| |||||| || ||||||||| | |||||||| |||||||| || || ||||||
Sbjct 65891 TTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAAGAG 65832
Query 39859 ATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918
|| || | | || | | ||||| | || || || | | ||||||||||| || ||
Sbjct 65831 ATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 65772
Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978
||| || || || || || || || |||||||| || | ||||| | | || ||
Sbjct 65771 ATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTGAAC 65712
Query 39979 CTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038
|| || |||| | | | ||| || || ||||| || ||||| || ||
Sbjct 65711 ATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGAAGAA 65652
Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCG--GGT--GTCAATTTATTCCAGTC-- 40092
|| | || ||||| || || | ||| ||| ||| || | ||| | ||||||
Sbjct 65651 GGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTT-TCCCAGTCGC 65593
Query 40093 -ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTT 40151
|||| |||| || | ||| |||||||| || ||||| || ||||| || || || |
Sbjct 65592 GATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCT 65536
Query 40152 TGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211
||||||| | ||| || | | ||||| ||||| || ||| |||| || ||| ||
Sbjct 65535 TGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTTG 65476
Query 40212 TTGCAAGGATGGGTTCC 40228
|| ||||| ||||||
Sbjct 65475 GTGTTAGGATTGGTTCC 65459
>seq415
Length=609146
Score = 176 bits (194), Expect = 6e-39
Identities = 290/416 (70%), Gaps = 3/416 (1%)
Strand=Plus/Plus
Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
||||| ||| ||||| | |||||||||| || ||||| || ||||| || ||| |
Sbjct 100767 ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGA 100826
Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913
||||||| || | |||| | ||||||| | ||| ||||| | | |||||||||||
Sbjct 100827 AAGAGATGATCTCTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATC 100886
Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973
|| |||||||||||||||||||| ||||| || ||||| ||| | || || | | |
Sbjct 100887 TCCGAATGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACT 100946
Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033
|| || || || |||| || | ||| || || ||||| || |||||
Sbjct 100947 TGAACATCGGACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCG 101006
Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTGTCAAT-TTATTCCAG 40090
|| || || | |||||||| || || | |||| || | || | | || | ||||
Sbjct 101007 AAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAG 101066
Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150
|| | | |||| ||||| ||||||||||||||| ||||| || || || || || |||
Sbjct 101067 TCGCGGTTGTCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTT 101126
Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206
|||||||| | ||| || | | || || ||||| || ||| ||||| | |||
Sbjct 101127 TTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 101182
Score = 98.7 bits (108), Expect = 1e-15
Identities = 280/426 (66%), Gaps = 6/426 (1%)
Strand=Plus/Plus
Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384
||| || || |||||||| |||||||| || || |||||||| |||| | || |||
Sbjct 100130 TTTCTGATAATCACCAACACGTTTCTCAAAGAAGTTAGTTTTCCCTTGAAGCGAGATAAG 100189
Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444
|||||| |||||||||||||||| ||| || || | || | | |
Sbjct 100190 TTCCATCCAATCAAACGGATTAGTAGCACCGTACACCTTCCCGTACCCAAGCGCACCCAA 100249
Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504
| ||||| |||||||| || || || |||||| |||| ||||| || | |
Sbjct 100250 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 100309
Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564
|| || || || | ||||||| | ||||| || || || || | ||
Sbjct 100310 CGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAAACGAT 100369
Query 39565 CGATGTTACTACCTCATCACTCGG--TGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622
||| | || || ||||| | | | | | || || || | | | || |||
Sbjct 100370 TGATTTCACGCGTTCTTCACTTAGCTTAGTTTTGAGAAGCGTGTAGAGAAGA--CAAGCG 100427
Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682
|| || || ||||| || || |||| | || |||||||| |||||||| |||||||||
Sbjct 100428 AAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCCAGGC 100487
Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAAGATGCC 39741
|| || || || || || ||||| || || | | |||||| ||| || |||||||| ||
Sbjct 100488 ATGAGTCCTCGTTTCTTTAGCCAGAAGATTG-AACAAAAGCTTCCGGAGAAGAAGATACC 100546
Query 39742 TTCTAC 39747
||| ||
Sbjct 100547 TTCAAC 100552
>seq1009
Length=3105692
Score = 118 bits (130), Expect = 1e-21
Identities = 160/223 (72%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| || || | || | ||||| | ||| | || | |||||| |||| ||||||
Sbjct 1455503 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACC 1455444
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||||||| ||||| || ||| ||| || ||||| |||| || || || || ||
Sbjct 1455443 ATTAGATGCTCCATTGGTACCACGAATGTAGCTTCCAGTTGCACGGATGTTGTGAACTGA 1455384
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| || || || ||| ||| || | |||||| ||||||||||||||||||
Sbjct 1455383 AACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATAT 1455324
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
||||| ||||||||||| ||||| | ||||| ||||||
Sbjct 1455323 CCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 1455281
Score = 102 bits (112), Expect = 1e-16
Identities = 143/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792
||| ||||||||| ||||||| || |||||| ||||| | | ||||||| || || ||
Sbjct 1457284 TAAGACTCTACGACTGTAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAG 1457225
Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852
||| || ||||| ||||||||||| |||||||||| | | |||||| | ||||
Sbjct 1457224 AATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACCAGAAGAGAATTTCTGATTCCATT 1457165
Query 68853 TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCA 68912
|| || |||| | ||| ||| ||||| | || ||||| | ||||||||
Sbjct 1457164 CTTTGAAATCGTATCCCTGAGAGTAGCCCAGTCCCAGCGGTCTGATGGAATTACATTCCA 1457105
Query 68913 AAGATCGTATTGTAGAATTCC 68933
| ||| ||| ||||||||
Sbjct 1457104 CATATCAGGTTGAAGAATTCC 1457084
Score = 89.7 bits (98), Expect = 7e-13
Identities = 92/118 (78%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140
||| |||||||||||||| | || || | |||||||||||||| ||||||| | | ||
Sbjct 1456761 AAGGATAAATGCATCTGCAAGACCTTGTATACCAATACCGATAGGCCTATGTCGCATGTT 1456702
Query 69141 TGAACTTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197
||| ||| ||| ||| | | ||||||| ||| | ||||||||| || ||||||||
Sbjct 1456701 TGAGGTTTTTGCTGTCTCCACT-GGATAATGATTCACATCTATAATCTTGTTAAGATT 1456645
Score = 86.0 bits (94), Expect = 9e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
||||| | || || | ||||||||||| |||||||||||| | ||| | | || |
Sbjct 1455172 GTTCCTGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATGG 1455113
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|| |||| ||||| || || ||||| || || || || | | || | ||||| |
Sbjct 1455112 TAAGTTTTGATAGCGGAATCGATATCTTCCTTGTGGATGCCAACAGAAACCCTCATCAGC 1455053
Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170
|| || ||||| | ||| ||| ||| | | ||| || ||||||||| | || ||
Sbjct 1455052 ATGTGTTGAGGCCTTTCAACCACTTTGCCTTGCACTTTTAAGAGGTATGATCTCTCAAGC 1454993
Query 70171 GTTTTAAACCCAAAATA 70187
|||||||| ||||| ||
Sbjct 1454992 GTTTTAAATCCAAAGTA 1454976
>seq778
Length=452071
Score = 116 bits (128), Expect = 5e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| || || | || | ||||| | ||| | || | |||||| |||| ||||||
Sbjct 423151 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 423092
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||||||| | |||||||| ||| ||| || ||||| |||| || |||||| || ||
Sbjct 423091 ATTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGA 423032
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| || ||||| || ||| || | |||||| ||| | ||| || || ||
Sbjct 423031 AACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAAT 422972
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
||||| |||||||||||| ||||| | ||||| |||||
Sbjct 422971 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 422930
Score = 96.9 bits (106), Expect = 5e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| || || || | ||||||||||| |||||||||||| | | ||| | || ||
Sbjct 422802 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 422743
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
||| |||| || || || || || || || || || || | || || | |||||
Sbjct 422742 GTAAGTTTGGATTGCAGAATCAATGTCTTCCTTGTGGATACCAACAGCAACCCTCATCAG 422683
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| || ||||| | ||| || | | | | |||||| ||||| ||| | || ||
Sbjct 422682 CATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAAG 422623
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202
||||||||| ||||| || | |||| ||| ||
Sbjct 422622 AGTTTTAAATCCAAAGTAATCGTATTCAAAATC 422590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686889575139960
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