Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 122 7e-23
seq1180 89.7 4e-13
>seq1432
Length=495105
Score = 122 bits (134), Expect = 7e-23
Identities = 434/665 (65%), Gaps = 19/665 (3%)
Strand=Plus/Plus
Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975
|| ||||| | ||||||| || || || || || ||||| || || || ||||||
Sbjct 65709 GATGTTCAGGTCTCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCAATCGAGAATATT 65768
Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035
||||| || ||||| ||||| || | || || ||||||||||| | |||| ||
Sbjct 65769 CATTCTGAGATGTATAGTCTCCTTCTCGACACTTACATCAAAGACAACAAAGAGAGAGAT 65828
Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTT 44095
| | ||| || || |||||| | ||| | | | |||||||| ||||| |
Sbjct 65829 CATCTCTTTCGCGCAATCGAAACAATTCCTTGTGTGACGAAGAAAGCAGAATGGGCAATG 65888
Query 44096 AAATGGATAAA-----TTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150
|||||||| || ||||| | ||| | |||| || | || || ||||| |
Sbjct 65889 AAATGGATCAACGGATCTCAAA-GCTTCGCT--GAGA--GAATCGTAGCTTTTGCTTGCG 65943
Query 44151 TGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209
| ||||| || ||||| || || | | |||| | ||||| ||||| ||||||||||||
Sbjct 65944 TTGAAGGTATATTCTTCTCTGGTAGCTTTTG-TTCGATATTCTGGTTGAAGAAACGAGGT 66002
Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269
|| |||||||| | || || || || || || || | || ||||| | || ||
Sbjct 66003 TTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCACTGT 66062
Query 44270 GATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATT 44329
||||| ||||| ||| | | | ||| || || |||| ||| ||||| || ||
Sbjct 66063 GATTTCGCTTGTTTGATCTATAGTCTTCTTAGA-AC--TAAG-CTTGATGTAGAACGTTT 66118
Query 44330 -ACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTT-ATGACAACAGCATTAC 44387
| | |||||| || || || |||| || ||| ||| | | || || | |
Sbjct 66119 GAAATCGATTGTTTGTGATGCGGTTGAGATCGAGAGAGAGTTTGTTTGCGAC-GCGCTTC 66177
Query 44388 CTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAG 44447
|| || | || |||||| |||||||| || || ||||| | |||| |
Sbjct 66178 CTTGTGCCTTGGTTGGTATGAATCGTGATTTGATGAGTCAGTACATTGAGTTTGTTGCTG 66237
Query 44448 ATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATT 44507
|| | ||| | | || || || | ||| ||| ||| || || |||||||
Sbjct 66238 ATAGGTTATTGACTGCGCTTGGGTGTGGTAAGGTGTATGGTGTGAGTAATCCTTTTGATT 66297
Query 44508 TTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAAT 44567
|||||| |||||| | |||| ||||| ||||||||||| || | ||||| || |
Sbjct 66298 GGATGGAATTGATTTCGCTTCAAGGTAAAACTAACTTTTTTGAGAAGAGAGTTGGTGAGT 66357
Query 44568 ATCAG 44572
|||||
Sbjct 66358 ATCAG 66362
>seq1180
Length=4302264
Score = 89.7 bits (98), Expect = 4e-13
Identities = 125/173 (72%), Gaps = 2/173 (1%)
Strand=Plus/Plus
Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052
|||| ||| ||||| || ||| ||| || ||||| || | || | | ||||||
Sbjct 2204250 ATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTAAGCTGATGG 2204309
Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAACTGTCATGT 41111
|| | || || || || |||| |||||||| ||| ||| |||| ||||||||||||
Sbjct 2204310 CACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTT-GCAGATGGAGAACTGTCATGT 2204368
Query 41112 CAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164
||| ||||||| | |||| || ||||| || || || || |||||||| ||
Sbjct 2204369 CAAATGTATCAGCGTTCAGCCGATATGGGTCTCGGAGTACCATTTAACATTGC 2204421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397445154295195
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |