Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1432 122 7e-23 seq1180 89.7 4e-13 >seq1432 Length=495105 Score = 122 bits (134), Expect = 7e-23 Identities = 434/665 (65%), Gaps = 19/665 (3%) Strand=Plus/Plus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || ||||| | ||||||| || || || || || ||||| || || || |||||| Sbjct 65709 GATGTTCAGGTCTCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCAATCGAGAATATT 65768 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 ||||| || ||||| ||||| || | || || ||||||||||| | |||| || Sbjct 65769 CATTCTGAGATGTATAGTCTCCTTCTCGACACTTACATCAAAGACAACAAAGAGAGAGAT 65828 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTT 44095 | | ||| || || |||||| | ||| | | | |||||||| ||||| | Sbjct 65829 CATCTCTTTCGCGCAATCGAAACAATTCCTTGTGTGACGAAGAAAGCAGAATGGGCAATG 65888 Query 44096 AAATGGATAAA-----TTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 |||||||| || ||||| | ||| | |||| || | || || ||||| | Sbjct 65889 AAATGGATCAACGGATCTCAAA-GCTTCGCT--GAGA--GAATCGTAGCTTTTGCTTGCG 65943 Query 44151 TGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 | ||||| || ||||| || || | | |||| | ||||| ||||| |||||||||||| Sbjct 65944 TTGAAGGTATATTCTTCTCTGGTAGCTTTTG-TTCGATATTCTGGTTGAAGAAACGAGGT 66002 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 || |||||||| | || || || || || || || | || ||||| | || || Sbjct 66003 TTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCACTGT 66062 Query 44270 GATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATT 44329 ||||| ||||| ||| | | | ||| || || |||| ||| ||||| || || Sbjct 66063 GATTTCGCTTGTTTGATCTATAGTCTTCTTAGA-AC--TAAG-CTTGATGTAGAACGTTT 66118 Query 44330 -ACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTT-ATGACAACAGCATTAC 44387 | | |||||| || || || |||| || ||| ||| | | || || | | Sbjct 66119 GAAATCGATTGTTTGTGATGCGGTTGAGATCGAGAGAGAGTTTGTTTGCGAC-GCGCTTC 66177 Query 44388 CTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAG 44447 || || | || |||||| |||||||| || || ||||| | |||| | Sbjct 66178 CTTGTGCCTTGGTTGGTATGAATCGTGATTTGATGAGTCAGTACATTGAGTTTGTTGCTG 66237 Query 44448 ATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATT 44507 || | ||| | | || || || | ||| ||| ||| || || ||||||| Sbjct 66238 ATAGGTTATTGACTGCGCTTGGGTGTGGTAAGGTGTATGGTGTGAGTAATCCTTTTGATT 66297 Query 44508 TTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAAT 44567 |||||| |||||| | |||| ||||| ||||||||||| || | ||||| || | Sbjct 66298 GGATGGAATTGATTTCGCTTCAAGGTAAAACTAACTTTTTTGAGAAGAGAGTTGGTGAGT 66357 Query 44568 ATCAG 44572 ||||| Sbjct 66358 ATCAG 66362 >seq1180 Length=4302264 Score = 89.7 bits (98), Expect = 4e-13 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| ||||| || ||| ||| || ||||| || | || | | |||||| Sbjct 2204250 ATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTAAGCTGATGG 2204309 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAACTGTCATGT 41111 || | || || || || |||| |||||||| ||| ||| |||| |||||||||||| Sbjct 2204310 CACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTT-GCAGATGGAGAACTGTCATGT 2204368 Query 41112 CAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 ||| ||||||| | |||| || ||||| || || || || |||||||| || Sbjct 2204369 CAAATGTATCAGCGTTCAGCCGATATGGGTCTCGGAGTACCATTTAACATTGC 2204421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397445154295195