Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq415 86.0 2e-11 >seq415 Length=609146 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 443750 CGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCT 443809 ||| |||||| | || ||||||||| | || || || ||||| |||| || || || | Sbjct 100532 CGGAAGCTTTTGT-TCAATCTTCTGGCTAAAGAAACGAGGACTCATGCCTGGACTAACAT 100474 Query 443810 TTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCT 443869 || |||||| ||||| ||| ||||| || | || ||||| ||||| |||||||||| Sbjct 100473 TTTCCAACGAATTGATCTCTCGAGACGAAGGACTACACTGCGATTTCGCTTGTCTTCTCT 100414 Query 443870 ACAC 443873 |||| Sbjct 100413 ACAC 100410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588290435107355